0.2.0.dev11

What's Changed

• Add support for Python 3.12 by @GlassOfWhiskey in #256
• Added possibility to load ports and steps in a different workflow by @LanderOtto in #274
• Fixed minor issue with port-targets documentation by @paoloviviani in #276
• Update Node.js version in CI pipeline by @GlassOfWhiskey in #286
• Update CWL v1.2 conformance tests by @GlassOfWhiskey in #288
• Refactor conftest.py by @LanderOtto in #287
• Fixed Config persistence by @LanderOtto in #289
• Fixed loop termination combinator persistence by @LanderOtto in #290
• Removed deprecated pkg_resources API by @GlassOfWhiskey in #291
• Replace cgi and logging.warn with new APIs by @GlassOfWhiskey in #292
• Improve test_download logic by @GlassOfWhiskey in #293
• Add warning messages for default connector params by @GlassOfWhiskey in #294
• Add optional param to composite processors by @GlassOfWhiskey in #295
• Fix copy remote-to-remote using ConnectorWrapper by @LanderOtto in #301
• Adjusted local-to-remote copy with folders by @GlassOfWhiskey in #308
• Fixed remote-to-local copy of nested directories by @LanderOtto in #309
• Fixed template environment variables by @LanderOtto in #310
• Fixed SSHClientConnection closing by @LanderOtto in #311
• Fixed incomplete stream reading by @LanderOtto in #314
• Fix valueFrom type checking behaviour by @GlassOfWhiskey in #323
• Fixed data location invalidation by @LanderOtto in #324
• Fixed job name by @LanderOtto in #325
• Fixed typo errors by @LanderOtto in #326
• Added missing task creation in some gathers by @LanderOtto in #327
• Fixed symbolic link remote input data error by @LanderOtto in #328
• Added StreamWrapper documentation by @GlassOfWhiskey in #329
• Fixed CWLConditionalStep persistence by @LanderOtto in #330
• Fixed provenance issues by @LanderOtto in #331
• Improved error message of batch systems when job fails by @LanderOtto in #332
• Added check after the creation data by @LanderOtto in #336
• Add no regression test for Sphinx documentation by @GlassOfWhiskey in #337
• Reduce size of database metadata by @LanderOtto in #338
• Fixed get method of RemotePathMapper by @LanderOtto in #343
• Move CWL 1.2 conformance to main branch by @GlassOfWhiskey in #346
• Improved scatter/gather performance by @LanderOtto in #348
• Added new queries to the Database by @LanderOtto in #356
• Added retries and retryDelay parameters in the SSHConnector configuration by @LanderOtto in #361
• Fixed some bugs by @LanderOtto in #333
• Fix Codecov GitHub action by @GlassOfWhiskey in #374
• Fix CWL Docker Requirement config example by @GlassOfWhiskey in #375
• Remove SSH deployment from MacOS CI by @GlassOfWhiskey in #376
• Fix Codecov GitHub Action by @GlassOfWhiskey in #379
• Fix Codecov GitHub Action by @GlassOfWhiskey in #380
• Add codecov.yml configuration file by @GlassOfWhiskey in #382
• Support for nested Location objects by @GlassOfWhiskey in #383
• Add __slots__ attribute to Token objects by @GlassOfWhiskey in #385
• Fixed provenance for the size tokens by @LanderOtto in #370
• Remove __eq__ and __hash__ from Location by @GlassOfWhiskey in #389
• Refactor the Location class hierarchy by @GlassOfWhiskey in #390
• Fixed asyncio.Event synchronizations when an exception occurs by @LanderOtto in #395
• Fixed input ports of DotProductSizeTransformer by @LanderOtto in #396
• Fixed wrapped connector calls for QueueManagerConnector classes by @LanderOtto in #403
• Fix ListMergeCombinator port names by @LanderOtto in #407
• Update MacOS X CI/CD pipeline by @GlassOfWhiskey in #408
• Fixed glob on symbolic link path by @LanderOtto in #417
• Removed scheduling_policy attribute in Target class by @LanderOtto in #421
• Removed scheduling_groups attribute by @LanderOtto in #422
• Changed retrieval of location hardware in the SSHConnector class by @LanderOtto in #424
• Refactor test_scheduler by @LanderOtto in #425
• Fixed ValueFromTransformer by @LanderOtto in #446
• Fixed scheduler timeout in Python<3.11 by @LanderOtto in #449

Dependencies

• Bump actions/setup-node from 3 to 4 by @dependabot in #263
• Bump actions/setup-python from 4 to 5 by @dependabot in #306
• Bump actions/upload-artifact from 3 to 4 by @dependabot in #318
• Bump aiohttp from 3.8.6 to 3.9.0 by @dependabot in #283
• Bump aiohttp from 3.9.0 to 3.9.1 by @dependabot in #296
• Bump aiohttp from 3.9.1 to 3.9.2 by @dependabot in #364
• Bump aiohttp from 3.9.2 to 3.9.3 by @dependabot in #367
• Bump aiohttp from 3.9.3 to 3.9.4 by @dependabot in #429
• Bump aiohttp from 3.9.4 to 3.9.5 by @dependabot in #431
• Bump aiosqlite from 0.19.0 to 0.20.0 by @dependabot in #388
• Bump asyncssh from 2.14.0 to 2.14.1 by @dependabot in #277
• Bump asyncssh from 2.14.1 to 2.14.2 by @dependabot in #322
• Bump bandit from 1.7.5 to 1.7.6 by @dependabot in #313
• Bump bandit from 1.7.6 to 1.7.7 by @dependabot in #360
• Bump bandit from 1.7.7 to 1.7.8 by @dependabot in #405
• Bump bcrypt from 4.0.1 to 4.1.1 by @dependabot in #299
• Bump bcrypt from 4.1.1 to 4.1.2 by @dependabot in #320
• Bump bcrypt from 4.1.2 to 4.1.3 by @dependabot in #448
• Bump black from 23.9.1 to 23.10.0 by @dependabot in #260
• Bump black from 23.10.0 to 23.10.1 by @dependabot in #264
• Bump black from 23.10.1 to 23.11.0 by @dependabot in #275
• Bump black from 23.11.0 to 23.12.0 by @dependabot in #315
• Bump black from 23.12.0 to 23.12.1 by @dependabot in #335
• Bump black from 23.12.1 to 24.1.0 by @dependabot in #362
• Bump black from 24.1.0 to 24.1.1 by @dependabot in #366
• Bump black from 24.1.1 to 24.2.0 by @dependabot in #381
• Bump black from 24.2.0 to 24.3.0 by @dependabot in #413
• Bump black from 24.3.0 to 24.4.0 by @dependabot in #430
• Bump black from 24.4.0 to 24.4.1 by @dependabot in #439
• Bump black from 24.4.1 to 24.4.2 by @dependabot in #440
• Bump cachetools from 5.3.1 to 5.3.2 by @dependabot in #265
• Bump cachetools from 5.3.2 to 5.3.3 by @dependabot in #394
• Bump codecov/codecov-action from 3 to 4 by @dependabot in #369
• Bump cwltest from 2.3.20230825125225 to 2.4.20231031143732 by @dependabot in #273
• Bump cwltest from 2.4.20231031143732 to 2.4.20231222081524 by @dependabot in #344
• Bump cwltest from 2.4.20231222081524 to 2.4.20240129145612 by @dependabot in #368
• Bump cwltest from 2.4.20240129145612 to 2.5.20240304113812 by @dependabot in #398
• Bump cwltest from 2.5.20240304113812 to 2.5.20240425111257 by @dependabot in #438
• Bump cwltool from 3.1.20230906142556 to 3.1.20231016170136 by @dependabot in #259
• Bump cwltool from 3.1.20231016170136 to 3.1.20231020140205 by @dependabot in #262
• Bump cwltool from 3.1.20231020140205 to 3.1.20231114134824 by @dependabot in #281
• Bump cwltool from 3.1.20231114134824 to 3.1.20231207110929 by @dependabot in #307
• Bump cwltool from 3.1.20231207110929 to 3.1.20240112164112 by @dependabot in #350
• Bump cwltool from 3.1.20240112164112 to 3.1.20240404144621 by @dependabot in #427
• Bump cwl-utils from 0.29 to 0.30 by @dependabot in #271
• Bump cwl-utils from 0.30 to 0.31 by @dependabot in #279
• Bump cwl-utils from 0.31 to 0.32 by @dependabot in #302
• Bump cwl-utils from 0.32 to 0.33 by @dependabot in #426
• Bump flake8-bugbear from 23.9.16 to 23.11.26 by @dependabot in #297
• Bump flake8-bugbear from 23.11.26 to 23.11.28 by @dependabot in #300
• Bump flake8-bugbear from 23.11.28 to 23.12.2 by @dependabot in #304
• Bump flake8-bugbear from 23.12.2 to 24.1.17 by @dependabot in #353
• Bump flake8-bugbear from 24.1.17 to 24.2.6 by @dependabot in #372
• Bump flake8-bugbear from 24.2.6 to 24.4.21 by @dependabot in #436
• Bump flake8-bugbear from 24.4.21 to 24.4.26 by @dependabot in #442
• Bump github/codeql-action from 2 to 3 by @dependabot in #316
• Bump helm/kind-action from 1.8.0 to 1.9.0 by @dependabot in #377
• Bump helm/kind-action from 1.9.0 to 1.10.0 by @dependabot in #437
• Bump importlib-metadata from 6.8.0 to 7.0.0 by @dependabot in #305
• Bump importlib-metadata from 7.0.0 to 7.0.1 by @dependabot in #334
• Bump importlib-metadata from 7.0.1 to 7.0.2 by @dependabot in #402
• Bump importlib-metadata from 7.0.2 to 7.1.0 by @dependabot in #416
• Bump importlib-resources from 6.1.1 to 6.1.2 by @dependabot in #391
• Bump importlib-resources from 6.1.2 to 6.1.3 by @dependabot in #401
• Bump importlib-resources from 6.1.3 to 6.3.2 by @dependabot in #412
• Bump importlib-resources from 6.3.2 to 6.4.0 by @dependabot in #414
• Bump jinja2 from 3.1.2 to 3.1.3 by @dependabot in #347
• Bump jinja2 from 3.1.3 to 3.1.4 by @dependabot in #447
• Bump jsonschema from 4.19.1 to 4.19.2 by @dependabot in #270
• Bump jsonschema from 4.19.2 to 4.20.0 by @dependabot in #282
• Bump jsonschema from 4.20.0 to 4.21.0 by @dependabot in #352
• Bump jsonschema from 4.21.0 to 4.21.1 by @dependabot in #358
• Bump jsonschema from 4.21.1 to 4.22.0 by @dependabot in #444
• Bump kubernetes-asyncio from 28.2.0 to 28.2.1 by @dependabot in #284
• Bump kubernetes-asyncio from 28.2.1 to 29.0.0 by @dependabot in #355
• Bump mukunku/tag-exists-action from 1.4.0 to 1.5.0 by @dependabot in #317
• Bump mukunku/tag-exists-action from 1.5.0 to 1.6.0 by @dependabot in #371
• Bump pandas from 2.1.1 to 2.1.2 by @dependabot in #269
• Bump pandas from 2.1.2 to 2.1.3 by @dependabot in #280
• Bump pandas from 2.1.3 to 2.1.4 by @dependabot in #312
• Bump pandas from 2.1.4 to 2.2.0 by @dependabot in #357
• Bump pandas from 2.2.0 to 2.2.1 by @dependabot in #392
• Bump pandas from 2.2.1 to 2.2.2 by @dependabot in #428
• Bump plotly from 5.17.0 to 5.18.0 by @dependabot in #267
• Bump plotly from 5.18.0 to 5.19.0 by @dependabot in #384
• Bump plotly from 5.19.0 to 5.20.0 by @dependabot in #415
• Bump plotly from 5.20.0 to 5.21.0 by @dependabot in #434
• Bump plotly from 5.21.0 to 5.22.0 by @dependabot in #445
• Bump psutil from 5.9.5 to 5.9.6 by @dependabot in #258
• Bump psutil from 5.9.6 to 5.9.7 by @dependabot in #321
• Bump psutil from 5.9.7 to 5.9.8 by @dependabot in #359
• Bump pytest from 7.4.2 to 7.4.3 by @dependabot in #266
• Bump pytest from 7.4.3 to 7.4.4 by @dependabot in #341
• Bump pytest from 7.4.4 to 8.0.0 by @dependabot in #365
• Bump pytest from 8.0.0 to 8.0.1 by @dependabot in #387
• Bump pytest from 8.0.1 to 8.0.2 by @dependabot in #393
• Bump pytest from 8.0.2 to 8.1.1 by @dependabot in #406
• Bump pytest-cov from 4.1.0 to 5.0.0 by @dependabot in #419
• Bump pytest-xdist from 3.3.1 to 3.4.0 by @dependabot in #278
• Bump pytest-xdist from 3.4.0 to 3.5.0 by @dependabot in #285
• Bump pytest-xdist from 3.5.0 to 3.6.1 by @dependabot in #441
• Bump pyupgrade from 3.14.0 to 3.15.0 by @dependabot in #257
• Bump pyupgrade from 3.15.0 to 3.15.1 by @dependabot in #386
• Bump pyupgrade from 3.15.1 to 3.15.2 by @dependabot in #420
• Bump rdflib from 6.3.2 to 7.0.0 by @dependabot in #193
• Bump sphinx from 7.2.6 to 7.3.7 by @dependabot in #435
• Bump sphinx-rtd-theme from 1.3.0 to 2.0.0 by @dependabot in #298
• Bump yattag from 1.15.1 to 1.15.2 by @dependabot in #268

Full Changelog: 0.2.0.dev10...0.2.0.dev11