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1. bonej-org/BoneJ2 bonej-org/BoneJ2 Public

   Plugins for bone image analysis

   Java 20 12

2. brainglobe/brainrender-napari brainglobe/brainrender-napari Public

   A napari plugin to render BrainGlobe atlases and associated data as layers.

   Python 20 2

3. brainglobe/brainrender brainglobe/brainrender Public

   A Python package to visualise neuroanatomical data in atlas space

   Python 554 81

4. brainglobe/cellfinder brainglobe/cellfinder Public

   Automated 3D cell detection in very large images

   Python 181 39

5. brainglobe/brainreg brainglobe/brainreg Public

   Automated 3D brain registration with support for multiple species and atlases.

   Python 126 29

6. brainglobe/brainglobe-segmentation brainglobe/brainglobe-segmentation Public

   Segmentation of anatomical structures in a common coordinate space

   Python 29 10