Further debug and copy source files

.readthedocs.yaml

@@ -30,29 +30,22 @@ build:
     # rust: "1.64"
     # golang: "1.19"
   jobs:
+    # Unshallow the git clone otherwise this may cause issues with Sphinx extensions
     post_checkout:
       - git fetch --unshallow
     # Altered PDF build and upload job, attributed to
     # https://stackoverflow.com/a/76992101/14001839
     post_build:
-      - pwd
-      - ls
       - mkdir --parents $READTHEDOCS_OUTPUT/pdf/
       # Generate LaTeX files in docs/build/ and doctrees in docs/_build/doctrees, skipping notebooks
       - python -m sphinx -T -E -b latex -d docs/_build/doctrees -D language=en docs docs/build/
-      - pwd
-      - ls
       - cd docs/build/ && cat latexmkrc
-      - pwd
       # Map non-zero exit codes to zero
-      - latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=pybamm -interaction=nonstopmode || true
-      - pwd
+      - cd docs/build/ && latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=pybamm -interaction=nonstopmode || true
       # Check if pybamm.pdf exists
-      - pwd
-      - test -f pybamm.pdf && echo "pybamm.pdf exists. Copying source file to $READTHEDOCS_OUTPUT/pdf/."
-      - pwd
-      - cd ../../ && cp "docs/build/pybamm.pdf" $READTHEDOCS_OUTPUT/pdf/
-      - pwd
+      - test -f docs/build/pybamm.pdf && echo "pybamm.pdf exists. Copying source file to $READTHEDOCS_OUTPUT/pdf/."
+      - ls $READTHEDOCS_OUTPUT/pdf/
+      - cp "docs/build/pybamm.pdf" $READTHEDOCS_OUTPUT/pdf/
       - ls $READTHEDOCS_OUTPUT/pdf/
 
 # Optionally declare the Python requirements required to build your docs