Build and publish package to PyPI #175
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build and publish package to PyPI | |
| on: | |
| release: | |
| types: [published] | |
| schedule: | |
| # Run at 10 am UTC on day-of-month 1 and 15. | |
| - cron: "0 10 1,15 * *" | |
| workflow_dispatch: | |
| inputs: | |
| target: | |
| description: 'Deployment target. Can be "pypi" or "testpypi"' | |
| default: "testpypi" | |
| debug_enabled: | |
| type: boolean | |
| description: 'Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)' | |
| required: false | |
| default: false | |
| # Set options available for all jobs that use cibuildwheel | |
| env: | |
| PYBAMM_DISABLE_TELEMETRY: "true" | |
| # Increase pip debugging output, equivalent to `pip -vv` | |
| CIBW_BUILD_VERBOSITY: 2 | |
| # Disable build isolation to allow pre-installing build-time dependencies. | |
| # Note: CIBW_BEFORE_BUILD must be present in all jobs using cibuildwheel. | |
| CIBW_BUILD_FRONTEND: "pip; args: --no-build-isolation" | |
| # Skip PyPy and MUSL builds in any and all jobs | |
| CIBW_SKIP: "pp* *musllinux*" | |
| FORCE_COLOR: 3 | |
| jobs: | |
| build_windows_wheels: | |
| name: Wheels (windows-latest) | |
| runs-on: windows-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: Get number of cores on Windows | |
| id: get_num_cores | |
| shell: python | |
| run: | | |
| from os import environ, cpu_count | |
| num_cpus = cpu_count() | |
| output_file = environ['GITHUB_OUTPUT'] | |
| with open(output_file, "a", encoding="utf-8") as output_stream: | |
| output_stream.write(f"count={num_cpus}\n") | |
| - name: Clone pybind11 repo (no history) | |
| run: git clone --depth 1 --branch v2.12.0 https://github.com/pybind/pybind11.git -c advice.detachedHead=false | |
| - name: Install vcpkg on Windows | |
| run: | | |
| cd C:\ | |
| rm -r -fo 'C:\vcpkg' | |
| git clone https://github.com/microsoft/vcpkg | |
| cd vcpkg | |
| .\bootstrap-vcpkg.bat | |
| - name: Cache packages installed through vcpkg on Windows | |
| uses: actions/cache@v4 | |
| env: | |
| cache-name: vckpg_binary_cache | |
| with: | |
| path: C:\Users\runneradmin\AppData\Local\vcpkg\archives | |
| key: ${{ runner.os }}-build-VS2022-${{ env.cache-name }}-${{ hashFiles('vcpkg*.json') }} | |
| # Enable tmate debugging of manually-triggered workflows if the input option was provided | |
| - name: Setup tmate session | |
| uses: mxschmitt/action-tmate@v3 | |
| if: ${{ github.event_name == 'workflow_dispatch' && inputs.debug_enabled }} | |
| - name: Build 64-bit wheels on Windows | |
| run: pipx run cibuildwheel --output-dir wheelhouse | |
| env: | |
| CIBW_ENVIRONMENT: > | |
| PYBAMM_DISABLE_TELEMETRY="true" | |
| PYBAMM_USE_VCPKG=ON | |
| VCPKG_ROOT_DIR=C:\vcpkg | |
| VCPKG_DEFAULT_TRIPLET=x64-windows-static-md | |
| VCPKG_FEATURE_FLAGS=manifests,registries | |
| CMAKE_GENERATOR="Visual Studio 17 2022" | |
| CMAKE_GENERATOR_PLATFORM=x64 | |
| CMAKE_BUILD_PARALLEL_LEVEL=${{ steps.get_num_cores.outputs.count }} | |
| CIBW_ARCHS: AMD64 | |
| CIBW_BEFORE_BUILD: python -m pip install setuptools wheel delvewheel # skip CasADi and CMake | |
| # Fix access violation because GHA runners have modified PATH that picks wrong | |
| # msvcp140.dll, see https://github.com/adang1345/delvewheel/issues/54 | |
| CIBW_REPAIR_WHEEL_COMMAND: delvewheel repair --add-path C:/Windows/System32 -w {dest_dir} {wheel} | |
| CIBW_TEST_EXTRAS: "all,dev,jax" | |
| CIBW_TEST_COMMAND: | | |
| python -c "import pybamm; print(pybamm.IDAKLUSolver())" | |
| python -m pytest -m cibw {project}/tests/unit | |
| - name: Upload Windows wheels | |
| uses: actions/[email protected] | |
| with: | |
| name: wheels_windows | |
| path: ./wheelhouse/*.whl | |
| if-no-files-found: error | |
| build_manylinux_wheels: | |
| name: Wheels (linux-amd64) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| name: Check out PyBaMM repository | |
| - uses: actions/setup-python@v5 | |
| name: Set up Python | |
| with: | |
| python-version: 3.11 | |
| - name: Clone pybind11 repo (no history) | |
| run: git clone --depth 1 --branch v2.12.0 https://github.com/pybind/pybind11.git -c advice.detachedHead=false | |
| - name: Build wheels on Linux | |
| run: pipx run cibuildwheel --output-dir wheelhouse | |
| env: | |
| CIBW_ENVIRONMENT: > | |
| PYBAMM_DISABLE_TELEMETRY="true" | |
| CIBW_ARCHS_LINUX: x86_64 | |
| CIBW_BEFORE_ALL_LINUX: > | |
| yum -y install openblas-devel lapack-devel && | |
| bash scripts/install_sundials.sh 6.0.3 6.5.0 | |
| CIBW_BEFORE_BUILD_LINUX: python -m pip install cmake casadi setuptools wheel | |
| CIBW_REPAIR_WHEEL_COMMAND_LINUX: auditwheel repair -w {dest_dir} {wheel} | |
| CIBW_TEST_EXTRAS: "all,dev,jax" | |
| CIBW_TEST_COMMAND: | | |
| set -e -x | |
| python -c "import pybamm; print(pybamm.IDAKLUSolver())" | |
| python -m pytest -m cibw {project}/tests/unit | |
| - name: Upload wheels for Linux | |
| uses: actions/[email protected] | |
| with: | |
| name: wheels_manylinux | |
| path: ./wheelhouse/*.whl | |
| if-no-files-found: error | |
| build_macos_wheels: | |
| name: Wheels (${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [macos-13, macos-14] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - name: Clone pybind11 repo (no history) | |
| run: git clone --depth 1 --branch v2.12.0 https://github.com/pybind/pybind11.git -c advice.detachedHead=false | |
| - name: Install cibuildwheel | |
| run: python -m pip install cibuildwheel | |
| - name: Build wheels on macOS | |
| shell: bash | |
| run: | | |
| set -e -x | |
| # Set LLVM-OpenMP URL | |
| if [[ $(uname -m) == "x86_64" ]]; then | |
| OPENMP_URL="https://anaconda.org/conda-forge/llvm-openmp/11.1.0/download/osx-64/llvm-openmp-11.1.0-hda6cdc1_1.tar.bz2" | |
| elif [[ $(uname -m) == "arm64" ]]; then | |
| OPENMP_URL="https://anaconda.org/conda-forge/llvm-openmp/11.1.0/download/osx-arm64/llvm-openmp-11.1.0-hf3c4609_1.tar.bz2" | |
| fi | |
| # Download gfortran with proper macOS minimum version (11.0) | |
| if [[ $(uname -m) == "x86_64" ]]; then | |
| GFORTRAN_URL="https://github.com/isuruf/gcc/releases/download/gcc-11.3.0-2/gfortran-darwin-x86_64-native.tar.gz" | |
| KNOWN_SHA256="981367dd0ad4335613e91bbee453d60b6669f5d7e976d18c7bdb7f1966f26ae4 gfortran.tar.gz" | |
| elif [[ $(uname -m) == "arm64" ]]; then | |
| GFORTRAN_URL="https://github.com/isuruf/gcc/releases/download/gcc-11.3.0-2/gfortran-darwin-arm64-native.tar.gz" | |
| KNOWN_SHA256="84364eee32ba843d883fb8124867e2bf61a0cd73b6416d9897ceff7b85a24604 gfortran.tar.gz" | |
| fi | |
| # Validate gfortran tarball | |
| curl -L $GFORTRAN_URL -o gfortran.tar.gz | |
| if ! echo "$KNOWN_SHA256" != "$(shasum --algorithm 256 gfortran.tar.gz)"; then | |
| echo "Checksum failed" | |
| exit 1 | |
| fi | |
| mkdir -p gfortran_installed | |
| tar -xv -C gfortran_installed/ -f gfortran.tar.gz | |
| if [[ $(uname -m) == "x86_64" ]]; then | |
| export FC=$(pwd)/gfortran_installed/gfortran-darwin-x86_64-native/bin/gfortran | |
| export PATH=$(pwd)/gfortran_installed/gfortran-darwin-x86_64-native/bin:$PATH | |
| elif [[ $(uname -m) == "arm64" ]]; then | |
| export FC=$(pwd)/gfortran_installed/gfortran-darwin-arm64-native/bin/gfortran | |
| export PATH=$(pwd)/gfortran_installed/gfortran-darwin-arm64-native/bin:$PATH | |
| fi | |
| # link libgfortran dylibs and place them in $HOME/.local/lib | |
| # and then change rpath to $HOME/.local/lib for each of them | |
| # Note: libgcc_s.1.dylib not available on macOS arm64; skip for now | |
| mkdir -p $HOME/.local/lib | |
| if [[ $(uname -m) == "x86_64" ]]; then | |
| lib_dir=$(pwd)/gfortran_installed/gfortran-darwin-x86_64-native/lib | |
| for lib in libgfortran.5.dylib libgfortran.dylib libquadmath.0.dylib libquadmath.dylib libgcc_s.1.dylib libgcc_s.1.1.dylib; do | |
| cp $lib_dir/$lib $HOME/.local/lib/ | |
| install_name_tool -id $HOME/.local/lib/$lib $HOME/.local/lib/$lib | |
| codesign --force --sign - $HOME/.local/lib/$lib | |
| done | |
| elif [[ $(uname -m) == "arm64" ]]; then | |
| lib_dir=$(pwd)/gfortran_installed/gfortran-darwin-arm64-native/lib | |
| for lib in libgfortran.5.dylib libgfortran.dylib libquadmath.0.dylib libquadmath.dylib libgcc_s.1.1.dylib; do | |
| cp $lib_dir/$lib $HOME/.local/lib/ | |
| install_name_tool -id $HOME/.local/lib/$lib $HOME/.local/lib/$lib | |
| codesign --force --sign - $HOME/.local/lib/$lib | |
| done | |
| fi | |
| export SDKROOT=${SDKROOT:-$(xcrun --show-sdk-path)} | |
| # Can't download LLVM-OpenMP directly, use conda/mamba and set environment variables | |
| brew install miniforge | |
| mamba create -n pybamm-dev $OPENMP_URL | |
| if [[ $(uname -m) == "x86_64" ]]; then | |
| PREFIX="/usr/local/Caskroom/miniforge/base/envs/pybamm-dev" | |
| elif [[ $(uname -m) == "arm64" ]]; then | |
| PREFIX="/opt/homebrew/Caskroom/miniforge/base/envs/pybamm-dev" | |
| fi | |
| # Copy libomp.dylib from PREFIX to $HOME/.local/lib, needed for wheel repair | |
| cp $PREFIX/lib/libomp.dylib $HOME/.local/lib/ | |
| install_name_tool -id $HOME/.local/lib/libomp.dylib $HOME/.local/lib/libomp.dylib | |
| codesign --force --sign - $HOME/.local/lib/libomp.dylib | |
| export CC=/usr/bin/clang | |
| export CXX=/usr/bin/clang++ | |
| export CPPFLAGS="$CPPFLAGS -Xpreprocessor -fopenmp" | |
| export CFLAGS="$CFLAGS -I$PREFIX/include" | |
| export CXXFLAGS="$CXXFLAGS -I$PREFIX/include" | |
| export LDFLAGS="$LDFLAGS -L$PREFIX/lib -lomp" | |
| # cibuildwheel not recognising its environment variable, so set manually | |
| export CIBUILDWHEEL="1" | |
| python scripts/install_KLU_Sundials.py | |
| python -m cibuildwheel --output-dir wheelhouse | |
| env: | |
| CIBW_ENVIRONMENT: > | |
| PYBAMM_DISABLE_TELEMETRY="true" | |
| # 10.13 for Intel (macos-13), 11.0 for Apple Silicon (macos-14 and macos-latest) | |
| MACOSX_DEPLOYMENT_TARGET: ${{ matrix.os == 'macos-14' && '11.0' || '10.13' }} | |
| CIBW_ARCHS_MACOS: auto | |
| CIBW_BEFORE_BUILD: python -m pip install cmake casadi setuptools wheel delocate | |
| CIBW_REPAIR_WHEEL_COMMAND: | | |
| if [[ $(uname -m) == "x86_64" ]]; then | |
| delocate-listdeps {wheel} && delocate-wheel -v -w {dest_dir} {wheel} | |
| elif [[ $(uname -m) == "arm64" ]]; then | |
| # Use higher macOS target for now since casadi/libc++.1.0.dylib is still not fixed | |
| delocate-listdeps {wheel} && delocate-wheel -v -w {dest_dir} {wheel} --require-target-macos-version 11.1 | |
| for file in {dest_dir}/*.whl; do mv "$file" "${file//macosx_11_1/macosx_11_0}"; done | |
| fi | |
| CIBW_TEST_EXTRAS: "all,dev,jax" | |
| CIBW_TEST_COMMAND: | | |
| set -e -x | |
| python -c "import pybamm; print(pybamm.IDAKLUSolver())" | |
| python -m pytest -m cibw {project}/tests/unit | |
| - name: Upload wheels for macOS (amd64, arm64) | |
| uses: actions/[email protected] | |
| with: | |
| name: wheels_${{ matrix.os }} | |
| path: ./wheelhouse/*.whl | |
| if-no-files-found: error | |
| build_sdist: | |
| name: Build SDist | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Build SDist | |
| run: pipx run build --sdist | |
| - name: Upload SDist | |
| uses: actions/[email protected] | |
| with: | |
| name: sdist | |
| path: ./dist/*.tar.gz | |
| if-no-files-found: error | |
| publish_pypi: | |
| # This job is only of value to PyBaMM and would always be skipped in forks | |
| if: github.event_name != 'schedule' && github.repository == 'pybamm-team/PyBaMM' | |
| name: Upload package to PyPI | |
| needs: [ | |
| build_manylinux_wheels, | |
| build_macos_wheels, | |
| build_windows_wheels, | |
| build_sdist | |
| ] | |
| runs-on: ubuntu-latest | |
| environment: | |
| name: pypi | |
| url: https://pypi.org/p/pybamm | |
| permissions: | |
| id-token: write | |
| steps: | |
| - name: Download all artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: artifacts | |
| merge-multiple: true | |
| - name: Sanity check downloaded artifacts | |
| run: ls -lA artifacts/ | |
| - name: Publish to PyPI | |
| if: github.event.inputs.target == 'pypi' || github.event_name == 'release' | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| packages-dir: artifacts/ | |
| - name: Publish to TestPyPI | |
| if: github.event.inputs.target == 'testpypi' | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| packages-dir: artifacts/ | |
| repository-url: https://test.pypi.org/legacy/ | |
| open_failure_issue: | |
| needs: [ | |
| build_windows_wheels, | |
| build_manylinux_wheels, | |
| build_macos_wheels, | |
| build_sdist | |
| ] | |
| name: Open an issue if build fails | |
| if: ${{ always() && contains(needs.*.result, 'failure') && github.repository_owner == 'pybamm-team'}} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: JasonEtco/create-an-issue@v2 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| LOGS: ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| with: | |
| filename: .github/wheel_failure.md |