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updatek8s can now optionally add config #14

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12 changes: 11 additions & 1 deletion database/handler.go
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Original file line number Diff line number Diff line change
Expand Up @@ -171,7 +171,7 @@ func (handler *Handler) CreateJob(repliconTypeAPI api.RepliconTableType, jobname
}

//UpdateK8s Updates a job with its k8s id
func (handler *Handler) UpdateK8s(id string, k8s string) error {
func (handler *Handler) UpdateK8s(id string, k8s string, config *api.JobConfig) error {
ctx, _ := context.WithTimeout(context.Background(), 1*time.Second)

update_filter := bson.M{
Expand All @@ -185,6 +185,16 @@ func (handler *Handler) UpdateK8s(id string, k8s string) error {
},
}

if config != nil {
update = bson.M{
"$set": bson.M{
"k8sid": k8s,
"status": api.JobStatusEnum_INIT.String(),
"conf": config,
},
}
}

result, err := handler.Collection.UpdateOne(ctx, update_filter, update)
if err != nil {
log.Println(err.Error())
Expand Down
2 changes: 2 additions & 0 deletions database/models.go
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Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@ package database

import (
"go.mongodb.org/mongo-driver/bson/primitive"
"k8s.io/client-go/tools/clientcmd/api"
)

// Job The database model for a bakta job
Expand All @@ -22,4 +23,5 @@ type Job struct {
ConfString string
IsDeleted bool
Jobname string
Config *api.Config
}
5 changes: 3 additions & 2 deletions endpoints/job.go
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Original file line number Diff line number Diff line change
Expand Up @@ -6,11 +6,12 @@ import (
"encoding/base64"
"encoding/json"
"fmt"
"github.com/spf13/viper"
"log"
"os"
"time"

"github.com/spf13/viper"

api "github.com/ag-computational-bio/bakta-web-api-go/bakta/web/api/proto/v1"
"github.com/ag-computational-bio/bakta-web-backend/monitor"
"github.com/ag-computational-bio/bakta-web-backend/objectStorage"
Expand Down Expand Up @@ -94,7 +95,7 @@ func (apiHandler *BaktaJobAPI) StartJob(ctx context.Context, request *api.StartJ
return nil, err
}

err = apiHandler.dbHandler.UpdateK8s(request.Job.GetJobID(), string(k8sJob.GetUID()))
err = apiHandler.dbHandler.UpdateK8s(request.Job.GetJobID(), string(k8sJob.GetUID()), request.GetConfig())
if err != nil {
log.Println(err.Error())
return nil, err
Expand Down
2 changes: 1 addition & 1 deletion scheduler/simple_scheduler.go
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Original file line number Diff line number Diff line change
Expand Up @@ -101,7 +101,7 @@ func (scheduler *SimpleScheduler) StartJob(jobID string, jobConfig *api.JobConfi
return nil, err
}

err = scheduler.databaseHandler.UpdateK8s(jobID, string(scheduledJob.UID))
err = scheduler.databaseHandler.UpdateK8s(jobID, string(scheduledJob.UID), nil)
if err != nil {
log.Println(err.Error())
return nil, err
Expand Down