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add data to metadata summary pane #66

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merged 1 commit into from
Nov 8, 2023
Merged

add data to metadata summary pane #66

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32 changes: 32 additions & 0 deletions src/views/show-results/DisplayMetadata.vue
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Original file line number Diff line number Diff line change
@@ -0,0 +1,32 @@
<script setup lang="ts">
import type { Metadata } from "@/model/Metadata";
import type { PropType } from "vue";

const props = defineProps({
id: { type: String },
metadata: { type: Object as PropType<Metadata>, required: true },
});
</script>

<template>
<table>
<tbody>
<tr v-if="metadata.project_name">
<th class="text-end">Project Name:</th>
<td class="ps-5">{{ metadata.project_name }}</td>
</tr>
<tr v-if="metadata.sample?.collection_date">
<th class="text-end">Collection Date:</th>
<td class="ps-5">{{ metadata.sample.collection_date }}</td>
</tr>
<tr v-if="metadata.sample?.country">
<th class="text-end">Country:</th>
<td class="ps-5">{{ metadata.sample.country }}</td>
</tr>
<tr v-if="metadata.sequencing?.instrument_model">
<th class="text-end">Sequencing Instrument:</th>
<td class="ps-5">{{ metadata.sequencing?.instrument_model }}</td>
</tr>
</tbody>
</table>
</template>
2 changes: 2 additions & 0 deletions src/views/show-results/ResultView.vue
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Original file line number Diff line number Diff line change
Expand Up @@ -104,6 +104,7 @@ state.value.setState(State.Loading);
baktaResult &&
gtdbtkResult &&
checkmResult &&
metadata &&
mlstResult
"
>
Expand All @@ -113,6 +114,7 @@ state.value.setState(State.Loading);
:gtdbtk="gtdbtkResult"
:checkm="checkmResult"
:mlst="mlstResult"
:metadata="metadata"
/>
</template>
<template v-if="active_tab == 'metadata'">
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7 changes: 6 additions & 1 deletion src/views/show-results/SummaryPane.vue
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Original file line number Diff line number Diff line change
Expand Up @@ -8,15 +8,18 @@ import type { PropType } from "vue";
import BaktaStats from "@/views/show-results/bakta/BaktaStats.vue";
import DisplayAssembly from "@/views/show-results/DisplayAssembly.vue";
import GtdbtkTaxonomy from "@/views/show-results/GtdbtkTaxonomy.vue";
import DisplayMetadata from "./DisplayMetadata.vue";
import PhylogenyTree from "@/components/PhylogenyTree.vue";
import ContigBar from "@/components/ContigBar.vue";
import type { Metadata } from "@/model/Metadata";

const props = defineProps({
id: { type: String },
bakta: { type: Object as PropType<BaktaResult>, required: true },
checkm: { type: Object as PropType<CheckmResult>, required: true },
gtdbtk: { type: Object as PropType<GtdbtkResult>, required: true },
mlst: { type: Object as PropType<MlstResult>, required: true },
metadata: { type: Object as PropType<Metadata>, required: true },
});
</script>

Expand All @@ -25,7 +28,9 @@ const props = defineProps({
<div class="col-lg-4 col-md-12">
<div class="card h-100">
<div class="card-header">Metadata</div>
<div class="card-body">...</div>
<div class="card-body">
<DisplayMetadata :metadata="metadata" />
</div>
</div>
</div>
<div class="col-lg-4 col-md-12">
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