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seminar6 part 2 added
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PominovaMS committed Oct 2, 2020
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18 changes: 9 additions & 9 deletions seminar6/seminar6_part1_ROI_time_series.ipynb
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"version": "3.6.7"
},
"colab": {
"name": "seminar_6.1_ROI_time_series.ipynb",
"name": "seminar6_part1_ROI_time_series.ipynb",
"provenance": [],
"collapsed_sections": [
"hqZksnfwt34o"
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"id": "TZIZlv5Hs2e-"
},
"source": [
"<!-- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/googlecolab/colabtools/blob/master/notebooks/colab-github-demo.ipynb) -->\n",
"<a href=\"https://colab.research.google.com/drive/1yTi-SM7YxHQOalGjF1hDSRUIxNoNlsx9\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n",
"\n",
"# **Seminar 6: Deep Learning for fMRI**\n",
"\n",
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"import torchvision\n",
"import torchvision.transforms as transforms"
],
"execution_count": 1,
"execution_count": null,
"outputs": []
},
{
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"# check if gpu is available\n",
"!nvidia-smi"
],
"execution_count": 2,
"execution_count": null,
"outputs": [
{
"output_type": "stream",
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" print(\"Not using GPU\")\n",
"device = 0"
],
"execution_count": 3,
"execution_count": null,
"outputs": [
{
"output_type": "stream",
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"from google.colab import drive\n",
"drive.mount('/content/drive')"
],
"execution_count": 4,
"execution_count": null,
"outputs": [
{
"output_type": "stream",
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"display(targets_df[\"DX_GROUP\"].value_counts())\n",
"display(targets_df[\"SOURCE\"].value_counts())"
],
"execution_count": 5,
"execution_count": null,
"outputs": [
{
"output_type": "display_data",
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" def __len__(self):\n",
" return len(self.roi_ts)"
],
"execution_count": 9,
"execution_count": null,
"outputs": []
},
{
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" def __call__(self, data):\n",
" return torch.FloatTensor(data)"
],
"execution_count": 7,
"execution_count": null,
"outputs": []
},
{
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4 changes: 2 additions & 2 deletions seminar6/seminar6_part2_fullsize_fMRI.ipynb
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"version": "3.6.7"
},
"colab": {
"name": "seminar_6.2_fullsize_fMRI.ipynb",
"name": "seminar6_part2_fullsize_fMRI.ipynb",
"provenance": [],
"collapsed_sections": [
"C4A2xz0u0__H",
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},
"source": [
"<!-- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/googlecolab/colabtools/blob/master/notebooks/colab-github-demo.ipynb) -->\n",
"<!-- <a href=\"https://colab.research.google.com/drive/1ZRkcOVQeo4iNvBqIWx5bepZ5vchXL6KN\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a> -->\n",
"<a href=\"https://colab.research.google.com/drive/1ZE0L54UDA2p-vRZs79BvLDjEp6bMY9Ox#scrollTo=TZIZlv5Hs2e-&uniqifier=1\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n",
"\n",
"# **Seminar 6: Deep Learning for fMRI**\n",
"\n",
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