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kondratevakate authored Sep 21, 2020
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Expand Up @@ -9,23 +9,25 @@ This course is specifically aimed at MSc and PhD students with basic knowledge o


### The list of the current seminars published (will be updated with time):

* SEMINAR 0 (04.09) BASH for Engeneering pipelines, CometML
* Before seminar you are to install Docker https://www.docker.com/

* SEMINAR 1 (07.09, 11.09) EEG analysis, Machine Learning in EEG

* SEMINAR 2 (14.09) MRI data analysis, sources, databases, tools
* Before seminar, please, do the following:
Before seminar, please, do the following:
1) Install Docker https://docs.docker.com/get-docker/
2) Download `data` folder from link https://drive.google.com/drive/folders/1P0ZhS1EoDY6fncnJb7foNFPjY5uoN6r0
3) Clone repository to your local machine
4) Run docker locally and ensure it working with command `docker run hello-world`
5) In terminal: `cd NEUROML/seminar2`
6) Type command `docker build -t neuroml/seminar2:0.0.1` and wait for successfull build
7) Run `docker run --rm -it -v /directory/to/downloaded/data:/workspace/data -p 8080:8080 neuroml/seminar2:0.0.1`
* `/directory/to/downloaded/data` from 2)
`/directory/to/downloaded/data` from 2)
8) Open browser (preferebly Chrome) -> localhost:8080
* Before the seminar you are to install FreeSurfer https://surfer.nmr.mgh.harvard.edu/
* SEMINAR 3 (18.09) Machine Learning for structural MRI data analysis
* Before the seminar you are to get an account and granted access here https://db.humanconnectome.org/data/projects/HCP_1200
Before the seminar you are to get an account and granted access here https://db.humanconnectome.org/data/projects/HCP_1200
* SEMINAR 4 (21.09) fMRI data preprocessing, analysis, GLM
1) First follow the instruction for geting the docker image: https://miykael.github.io/nipype_tutorial/notebooks/introduction_docker.html.
2) Clone the `seminar4` repository
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