This repo will be our hook into the BioImage.IO model zoo.
We're training a U-net to classify lipid droplets from liver samples. We use the Zooniverse platform to get human-annotated training data.
These are early days. We've pulled annotations from an early iteration of the project and trained a 2D Unet (see notebooks) and have a model (see models for a brief explanation, the actual model files live here).
We're looking to build out our complete workflow and are requesting partnership with BioImage.IO.