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28 Open 131 Closed
28 Open 131 Closed
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Issues list

Choosing the ‘--data_type’ parameter for combined PacBio CCS and Nanopore data question Further information is requested
#208 opened Jul 1, 2024 by biochristmas
1
A Novel transcript without high-confidence reads support
#207 opened Jun 27, 2024 by yuyun-zhang
2
invalid continuation byte error input data Issue is caused by input data third-party problem Problem is related to other tools, libraries, system etc
#206 opened Jun 25, 2024 by cariocow
6
Question about exon counting question Further information is requested
#205 opened Jun 20, 2024 by weib3
2
read assignments file interpretation question Further information is requested
#204 opened Jun 16, 2024 by sparthib
1
Under the Reference-base model, TSS and TTS are not accurately annotated. weird results Something looks odd in the resulting files
#203 opened Jun 14, 2024 by zpliu1126
3
trying to understand the OUT.novel_vs_known.SQANTI-like.tsv weird results Something looks odd in the resulting files
#202 opened Jun 13, 2024 by sparthib
3
An inaccurate annotation
#200 opened Jun 13, 2024 by zpliu1126
3
if isoquant perfomed the isoform collapse? question Further information is requested
#199 opened Jun 11, 2024 by wjcre2023
1
Pipeline - combine assembly and reads question Further information is requested
#198 opened Jun 10, 2024 by KristinaGagalova
1
Isoquant seems stuck input data Issue is caused by input data performance Issues related to computational perfromance
#197 opened Jun 6, 2024 by francicco
9
Increased runtime with IsoQuant 3.4.1 performance Issues related to computational perfromance
#196 opened Jun 6, 2024 by FabianJetzinger
1
transcript numbers don't match between OUT.transcript_model_grouped_tpm.tsv and OUT.transcript_models.gtf bug Something isn't working
#195 opened May 29, 2024 by dudududu12138
5
The issue of matching between the expanded GTF and transcript types
#194 opened May 27, 2024 by biochristmas
2
Combining multiple data from different methods (direct RNA, pacbio ISOSEQ... etc)
#193 opened May 22, 2024 by jjuhyunkim
1
Add sample label to read_assignments.tsv/transcript_model_reads.tsv based on --labels?
#192 opened May 21, 2024 by yangao07
1
isoquant terminated abruptly during multi-sample input
#191 opened May 20, 2024 by dongdongdong0203
2
gene_id attribute value cannot be found enhancement New feature or request input data Issue is caused by input data
#190 opened May 17, 2024 by sqwwww
2
Memory exceeded when running single cell data alignment performance Issues related to computational perfromance
#189 opened May 16, 2024 by Qirongmao97
17
unexpected keyword argument 'indexname' third-party problem Problem is related to other tools, libraries, system etc
#188 opened May 11, 2024 by francicco
11
JSONDecodeError while running invalid This doesn't seem right
#182 opened May 6, 2024 by abhijitcbio
1
TPM value difference of a sample between runs question Further information is requested
#181 opened May 5, 2024 by abhijitcbio
2
run isoquant on several samples question Further information is requested weird results Something looks odd in the resulting files
#180 opened May 3, 2024 by linalu1121
3
--read_group:file functionality working in release version? weird results Something looks odd in the resulting files
#167 opened Mar 13, 2024 by HabiBBBaghirov
10
Bug: missing transcript annotations (present by StringTie) weird results Something looks odd in the resulting files
#148 opened Feb 7, 2024 by sarahcalvo
2
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