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abcsFrederick

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  1. NGS_Preprocessing_Pipeline NGS_Preprocessing_Pipeline Public

    NGS Pipelines for Preprocessing RNA-seq, Whole Genome Sequencing and Exome-seq, and miRNA-Seq Data

    Python 10 2

  2. non-B_gfa non-B_gfa Public

    Identify non-B forming motifs

    C 8 6

  3. NGS_SV_CNV_Pipelines NGS_SV_CNV_Pipelines Public

    Genome Structural Variants Detection and Annotation Pipelines. Functions include NGS data QC, both germline and somatic SVs and CNVs detections, SVs and CNVs annotation and visualization.

    Python 6 1

  4. scRNA_pipeline scRNA_pipeline Public

    Single Cell RNA-seq Analysis Pipeline

    R 4

  5. Intro-to-R-Fall2020 Intro-to-R-Fall2020 Public

    R for Reproducible Scientific Analysis

    R 3

  6. Pipeliner Pipeliner Public

    Forked from DLWheeler/Pipeliner

    Pipeliner Program

    Ragel 1 1

Repositories

Showing 10 of 86 repositories
  • RENEE Public Forked from CCBR/RENEE

    A comprehensive quality-control and quantification RNA-seq pipeline

    abcsFrederick/RENEE’s past year of commit activity
    Python 0 MIT 4 0 0 Updated Dec 20, 2024
  • Dockers Public Forked from CCBR/Dockers

    A collection of Dockerfiles to facilitate reproducibility across computing environments.

    abcsFrederick/Dockers’s past year of commit activity
    Dockerfile 0 3 0 0 Updated Dec 4, 2024
  • CHAMPAGNE Public Forked from CCBR/CHAMPAGNE

    CHromAtin iMmuno PrecipitAtion sequencinG aNalysis pipEline

    abcsFrederick/CHAMPAGNE’s past year of commit activity
    Nextflow 0 MIT 2 0 0 Updated Nov 28, 2024
  • CCBR_NextflowTemplate Public template Forked from CCBR/CCBR_NextflowTemplate

    CCBR template for Nextflow workflows

    abcsFrederick/CCBR_NextflowTemplate’s past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Nov 26, 2024
  • XAVIER Public Forked from CCBR/XAVIER

    An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH

    abcsFrederick/XAVIER’s past year of commit activity
    Python 0 MIT 3 0 0 Updated Nov 6, 2024
  • SF_LR_scRNA Public Forked from CCRSF-IFX/SF_LR_scRNA
    abcsFrederick/SF_LR_scRNA’s past year of commit activity
    R 0 1 0 0 Updated Nov 5, 2024
  • SF_Downstream_RNA-seq Public Forked from CCRSF-IFX/SF_Downstream_RNA-seq

    RNA-Seq Downstream Differential Gene Expression and Gene Set Enrichment Analysis

    abcsFrederick/SF_Downstream_RNA-seq’s past year of commit activity
    R 0 MIT 1 0 0 Updated Oct 23, 2024
  • abcsFrederick.github.io Public

    This is the repo for the official abcsFrederick IO webpage.

    abcsFrederick/abcsFrederick.github.io’s past year of commit activity
    0 0 0 0 Updated Oct 22, 2024
  • CRUISE Public Forked from CCBR/CRISPIN

    Crispr scReen seqUencIng analySis pipEline

    abcsFrederick/CRUISE’s past year of commit activity
    Nextflow 0 MIT 3 0 0 Updated Oct 17, 2024
  • abcsFrederick/Oncogenomics_NF_WF’s past year of commit activity
    Nextflow 0 1 0 0 Updated Oct 17, 2024

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