Pinned Loading

1. RNAmountAlign RNAmountAlign Public

   RNA sequence/structure alignment

   C++

2. RNAdegree RNAdegree Public

   Cubic time DP algorithm for the expected number of structural neighbors of RNA

   C

3. MS2distance MS2distance Public

   Algorithms to compute the shortest MS2 folding trajectory between any two given RNA secondary structures.

   Python

4. RNAsampleCDS RNAsampleCDS Public

   Given at most six peptides of length n in reading frames 0,1,2 in sense and anti sense strands, RNAsampleCDS samples RNA sequences of size (3n+2) that translate into the peptides in all of the corr…

   Python

5. MC_Gillespie MC_Gillespie Public

   Simulates kinetics of RNA folding with event-driven Monte Carlo or Gillespie algorithms

   C

6. RNAstructuralDiversity RNAstructuralDiversity Public

   A unified program for computation of structual measures for RNA

   C