install samgeo using mamba due to deps issue with pip

a2s-institute · Oct 29, 2024 · 2c4ed04 · 2c4ed04
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diff --git a/geo-notebook/cuda12-pytorch-2.2.2/Dockerfile b/geo-notebook/cuda12-pytorch-2.2.2/Dockerfile
@@ -23,7 +23,8 @@ USER root
 # (maybe) fix sqlite3 issue
 # ImportError: /opt/conda/lib/python3.11/lib-dynload/_sqlite3.cpython-311-x86_64-linux-gnu.so: undefined symbol: sqlite3_deserialize
 # https://github.com/proxystore/taps/issues/151#issuecomment-2339537161
-RUN mamba install -y libsqlite==3.45.*
+RUN mamba install -y libsqlite==3.45.* && \
+    mamba install -y -c conda-forge segment-geospatial
 
 RUN rm /tmp/requirements.txt && \
     /opt/conda/bin/conda clean -afy && \

diff --git a/geo-notebook/cuda12-pytorch-2.2.2/requirements.txt b/geo-notebook/cuda12-pytorch-2.2.2/requirements.txt
@@ -13,4 +13,3 @@ pystac
 # pyproj needs to be reinstalled
 # issue: https://github.com/pyproj4/pyproj/discussions/1262
 pyproj
-segment-geospatial