_config.yml

# -----------------------------------------------------------------------------
# Site settings
# -----------------------------------------------------------------------------

title: blank # the website title (if blank, full name will be used instead)
first_name: Yosef
middle_name:
last_name: Lab
email:
description: > # the ">" symbol means to ignore newlines until "footer_text:"
  Website for the Yosef Lab at UC Berkeley.
footer_text: >
  Department of Systems Immunology, Weizmann Institute of Science.
  Powered by <a href="http://jekyllrb.com/" target="_blank">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio">al-folio</a> theme.

url:  # the base hostname & protocol for your site
baseurl:  # the subpath of your site, e.g. /blog/
last_updated: false # set to true if you want to display last updated in the footer

# -----------------------------------------------------------------------------
# Layout
# -----------------------------------------------------------------------------

navbar_fixed: true
footer_fixed: true
# TODO: add layout settings (single page vs. multi-page)

# -----------------------------------------------------------------------------
# Open Graph
# -----------------------------------------------------------------------------
# Display links to the page with a preview object on social media.
# To achieve this, change serve_og_meta to true and then provide the URL of the
# preview image as the value of og_image.
serve_og_meta: false # Include Open Graph meta tags in the HTML head
og_image: # The site-wide (default for all links) Open Graph preview image

# -----------------------------------------------------------------------------
# Social integration
# -----------------------------------------------------------------------------

github_username: YosefLab # your GitHub user name
twitter_username: YosefLab # your Twitter handle
linkedin_username: # your LinkedIn user name
scholar_userid: # your Google Scholar ID
orcid_id: # your ORCID ID
medium_username: # your Medium username
quora_username: # your Quora username
publons_id: # your ID on Publons
research_gate_profile: # your profile on ResearchGate
blogger_url: # your blogger URL

contact_note:
google_analytics: UA-141905405-1 # out your google-analytics code

# -----------------------------------------------------------------------------
# Blog
# -----------------------------------------------------------------------------

blog_name: Blog  # your blog must have a name for it to show up in the nav bar
blog_description:
permalink: /blog/:year/:title/

# Pagination
pagination:
  enabled: true

# Comments
disqus_shortname: # put your disqus shortname

# -----------------------------------------------------------------------------
# Collections
# -----------------------------------------------------------------------------

collections:
  news:
    defaults:
      layout: post
    output: true
    permalink: /news/:path/
  software:
    output: true
    permalink: /software/:path/

news_limit: 5

# -----------------------------------------------------------------------------
# Jekyll settings
# -----------------------------------------------------------------------------

# Markdown and syntax highlight
markdown: kramdown
highlighter: rouge
highlight_theme: github  # https://github.com/jwarby/jekyll-pygments-themes
kramdown:
  input: GFM
  syntax_highlighter_opts:
    css_class: 'highlight'
    span:
      line_numbers: false
    block:
      line_numbers: false
      start_line: 1

# Includes & excludes
include: ['_pages']
exclude: [vendor]

# Plug-ins
plugins:
  - jekyll-email-protect
  - jekyll-paginate-v2
  - jekyll/scholar
  - jemoji
  # - material-sass

# -----------------------------------------------------------------------------
# Jekyll Scholar
# -----------------------------------------------------------------------------

scholar:

  last_name: Einstein

  style: apa
  locale: en

  source: /_bibliography/
  bibliography: papers.bib
  bibliography_template: bib

  replace_strings: true
  join_strings: true

  details_dir: bibliography
  details_layout: bibtex.html
  details_link: Details

  query: "@*"

# -----------------------------------------------------------------------------
# Optional Features
# -----------------------------------------------------------------------------

enable_google_analytics:  true
enable_mansory:           true
enable_math:              true
enable_tooltips:          false
show_social_icons:        false

# -----------------------------------------------------------------------------
# Library versions
# -----------------------------------------------------------------------------

academicons:
  version: "1.9.0"
  integrity: "sha512-W4yqoT1+8NLkinBLBZko+dFB2ZbHsYLDdr50VElllRcNt2Q4/GSs6u71UHKxB7S6JEMCp5Ve4xjh3eGQl/HRvg=="
bootstrap:
  version: "4.5.2"
  integrity:
    css: "sha512-MoRNloxbStBcD8z3M/2BmnT+rg4IsMxPkXaGh2zD6LGNNFE80W3onsAhRcMAMrSoyWL9xD7Ert0men7vR8LUZg=="
    js: "sha512-M5KW3ztuIICmVIhjSqXe01oV2bpe248gOxqmlcYrEzAvws7Pw3z6BK0iGbrwvdrUQUhi3eXgtxp5I8PDo9YfjQ=="
fontawesome:
  version: "5.14.0"
  integrity: "sha512-1PKOgIY59xJ8Co8+NE6FZ+LOAZKjy+KY8iq0G4B3CyeY6wYHN3yt9PW0XpSriVlkMXe40PTKnXrLnZ9+fkDaog=="
jquery:
  version: "3.5.1"
  integrity: "sha512-bLT0Qm9VnAYZDflyKcBaQ2gg0hSYNQrJ8RilYldYQ1FxQYoCLtUjuuRuZo+fjqhx/qtq/1itJ0C2ejDxltZVFg=="
mathjax:
  version: "3.1.2"
mansory:
  version: "4.2.2"
  integrity: "sha256-Nn1q/fx0H7SNLZMQ5Hw5JLaTRZp0yILA/FRexe19VdI="
mdb:
  version: "4.19.1"
  integrity:
    css: "sha512-RO38pBRxYH3SoOprtPTD86JFOclM51/XTIdEPh5j8sj4tp8jmQIx26twG52UaLi//hQldfrh7e51WzP9wuP32Q=="
    js: "sha512-Mug9KHKmroQFMLm93zGrjhibM2z2Obg9l6qFG2qKjXEXkMp/VDkI4uju9m4QKPjWSwQ6O2qzZEnJDEeCw0Blcw=="
popper:
  version: "2.4.4"
  integrity: "sha512-eUQ9hGdLjBjY3F41CScH3UX+4JDSI9zXeroz7hJ+RteoCaY+GP/LDoM8AO+Pt+DRFw3nXqsjh9Zsts8hnYv8/A=="