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@YosefLab

Yosef Lab

Department of Systems Immunology, Weizmann Institute of Science

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  1. VISION Public

    Signature Analysis and Visualization for Single-Cell RNA-seq

    R 172 33

  2. Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 95 28

  3. Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    Python 117 32

  4. Hotspot Public

    Python 130 16

  5. epitome Public

    Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

    Python 10 4

  6. popV Public

    Python 83 19

Repositories

Showing 10 of 68 repositories
  • Harreman Public

    Metabolic cell-cell communication inference in spatial transcriptomics.

    Python 0 BSD-3-Clause 0 0 0 Updated Nov 5, 2025
  • treedata Public

    anndata with trees

    Python 7 BSD-3-Clause 3 0 0 Updated Nov 5, 2025
  • pycea Public

    scverse lineage tracing analysis toolkit

    Python 4 BSD-3-Clause 2 0 1 Updated Nov 5, 2025
  • Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 95 MIT 28 24 (3 issues need help) 12 Updated Nov 4, 2025
  • Harreman-reproducibility Public

    This package contains the code to reproduce the figures and analyses performed in the Harreman manuscript.

    Jupyter Notebook 0 0 0 0 Updated Nov 4, 2025
  • scib-metrics Public

    Accelerated, Python-only, single-cell integration benchmarking metrics

    Python 76 BSD-3-Clause 19 7 1 Updated Nov 4, 2025
  • velovi Public
    Python 40 BSD-3-Clause 7 8 2 Updated Nov 3, 2025
  • popV Public
    Python 83 MIT 19 2 2 Updated Nov 3, 2025
  • Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    Python 117 BSD-3-Clause 32 52 2 Updated Oct 31, 2025
  • CellRangerIDE Public
    Python 0 0 0 0 Updated Oct 23, 2025
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