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What do the expected output files look like in COMPASS? #116

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skoturan opened this issue Oct 30, 2024 · 0 comments
Open

What do the expected output files look like in COMPASS? #116

skoturan opened this issue Oct 30, 2024 · 0 comments

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@skoturan
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skoturan commented Oct 30, 2024 •
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Hi,

I'm using COMPASS to analyse a single 10x multiome dataset- RNA modality only. The output folder seems to spit out each barcode as a separate sample with a: log file, err.log, out.log, reactions.txt and success_token.
The reactions.txt file looks like this:

Screenshot 2024-10-30 at 14 18 23

How is this to be interpreted or used downstream? Is this the right way to run compass for a single sample?

Please help!
Thanks
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@skoturan