Relax nonzero dimension requirement on HMC #178
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| name: tinystan tests | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| pull_request: | |
| workflow_dispatch: {} | |
| env: | |
| CACHE_VERSION: 2 | |
| # only run one copy per PR | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [windows-latest, ubuntu-latest, macos-latest] | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Check out github | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Stan build caching | |
| # note: not quite working since we use a development branch of Stan | |
| uses: actions/cache@v4 | |
| id: stan-cache | |
| with: | |
| path: ./stan/ | |
| key: ${{ runner.os }}-stan-${{ hashFiles('stan/src/stan/version.hpp') }}-v${{ env.CACHE_VERSION }} | |
| # we use the cache here to build the Stan models once for multiple interfaces | |
| - name: Set up test model cache | |
| uses: actions/cache@v4 | |
| id: test-models | |
| with: | |
| path: ./test_models/ | |
| key: ${{ hashFiles('**/*.stan', 'src/*', 'stan/src/stan/version.hpp', 'Makefile') }}-${{ matrix.os }}-v${{ env.CACHE_VERSION }} | |
| - name: Build test models | |
| run: | | |
| make O=2 test_models -j4 | |
| python: | |
| needs: [build] | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.9", "3.12"] | |
| fail-fast: false | |
| steps: | |
| - name: Check out github | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Restore Stan | |
| uses: actions/cache@v4 | |
| id: stan-cache | |
| with: | |
| path: ./stan/ | |
| key: ${{ runner.os }}-stan-${{ hashFiles('stan/src/stan/version.hpp') }}-v${{ env.CACHE_VERSION }} | |
| - name: Restore built models | |
| uses: actions/cache@v4 | |
| id: test-models | |
| with: | |
| path: ./test_models/ | |
| key: ${{ hashFiles('**/*.stan', 'src/*', 'stan/src/stan/version.hpp', 'Makefile') }}-${{ matrix.os }}-v${{ env.CACHE_VERSION }} | |
| - name: Install package | |
| run: | | |
| cd clients/python/ | |
| pip install pytest | |
| pip install . | |
| - name: Test import | |
| run: | | |
| python -c "import tinystan" | |
| - name: Run tests | |
| run: | | |
| pytest -v clients/python/ | |
| env: | |
| TINYSTAN: ${{ github.workspace }} | |
| - name: Run example | |
| run: | | |
| python clients/python/example.py | |
| env: | |
| TINYSTAN: ${{ github.workspace }} | |
| Rlang: | |
| needs: [build] | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| fail-fast: false | |
| steps: | |
| - name: Check out github | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Install R | |
| uses: r-lib/actions/[email protected] | |
| - name: Install R dependencies | |
| uses: r-lib/actions/[email protected] | |
| with: | |
| packages: | | |
| any::R6 | |
| any::testthat | |
| any::devtools | |
| any::posterior | |
| - name: Restore Stan | |
| uses: actions/cache@v4 | |
| with: | |
| path: ./stan/ | |
| key: ${{ runner.os }}-stan-${{ hashFiles('stan/src/stan/version.hpp') }}-v${{ env.CACHE_VERSION }} | |
| - name: Restore built models | |
| uses: actions/cache@v4 | |
| id: test-models | |
| with: | |
| path: ./test_models/ | |
| key: ${{ hashFiles('**/*.stan', 'src/*', 'stan/src/stan/version.hpp', 'Makefile') }}-${{ matrix.os }}-v${{ env.CACHE_VERSION }} | |
| - name: Run tests | |
| if: matrix.os != 'windows-latest' | |
| run: | | |
| cd clients/R | |
| Rscript -e "devtools::test(reporter = c(\"summary\", \"fail\"))" | |
| env: | |
| TINYSTAN: ${{ github.workspace }} | |
| - name: Run tests (windows) | |
| if: matrix.os == 'windows-latest' | |
| run: | | |
| cd clients/R | |
| Rscript -e 'devtools::test(reporter = c("summary", "fail"))' | |
| if (!$LASTEXITCODE.Equals(0)) {exit $LASTEXITCODE} | |
| env: | |
| TINYSTAN: ${{ github.workspace }} | |
| julia: | |
| needs: [build] | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| julia-version: ["1"] | |
| fail-fast: false | |
| steps: | |
| - name: Check out github | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Set up Julia | |
| uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ matrix.julia-version }} | |
| - name: Restore Stan | |
| uses: actions/cache@v4 | |
| id: stan-cache | |
| with: | |
| path: ./stan/ | |
| key: ${{ runner.os }}-stan-${{ hashFiles('stan/src/stan/version.hpp') }}-v${{ env.CACHE_VERSION }} | |
| - name: Restore built models | |
| uses: actions/cache@v4 | |
| id: test-models | |
| with: | |
| path: ./test_models/ | |
| key: ${{ hashFiles('**/*.stan', 'src/*', 'stan/src/stan/version.hpp', 'Makefile') }}-${{ matrix.os }}-v${{ env.CACHE_VERSION }} | |
| - name: Check import | |
| run: | | |
| cd clients/julia/ | |
| julia --project=. -e "using Pkg; Pkg.instantiate()" | |
| julia --project=. -e "using TinyStan" | |
| - name: Run tests | |
| run: | | |
| julia --project=clients/julia -t 2 -e "using Pkg; Pkg.test()" | |
| env: | |
| TINYSTAN: ${{ github.workspace }} | |
| - name: Run examples | |
| run: | | |
| julia --project=clients/julia clients/julia/example.jl | |
| env: | |
| TINYSTAN: ${{ github.workspace }} | |
| typescript: | |
| # needs: [build] # all tests are mocked at the moment | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Node | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| cache: 'yarn' | |
| cache-dependency-path: clients/typescript/yarn.lock | |
| - name: Install typescript dependencies | |
| run: cd clients/typescript; yarn | |
| - name: Run tests | |
| run: cd clients/typescript; yarn test | |