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Update README.md #5

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4 changes: 3 additions & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -7,4 +7,6 @@ Automated metadata annotation is carried out as follows:
1) **Experimental and sample description metadata** is imported from customized metadata-collection Excel spreadsheets and written in OMERO as key/value pairs, tags, and OMERO.tables. Metadata annotation can be associated with a Project, Dataset, or Image as appropriate.
2) [NBO-Q]() compliant **Microscopy metadata** is imported from existing Microscope-Hardware- and Microscope-Settings.JSON files produced using the [Micro-Meta App](https://github.com/WU-BIMAC/MicroMetaApp-Electron) and attached to the relevant Image in OMERO. The content of these JSON files can then be visualized using the [Micro-Meta App OMERO-plugin](https://github.com/WU-BIMAC/MicroMetaApp-Omero).

The OMERO Importer Python tool can be used in conjunction with the [OMERO Importer Excel Helper Python](https://github.com/WU-BIMAC/W-IDM_OmeroImporterExcelHelperPy) tool to facilitate harvesting Image file names and capturing sub-directory structures into tag annotations.
The OMERO Importer Python tool can be used in conjunction with Metadata annotation Excel spreadsheets and with the [OMERO Importer Excel Helper Python](https://github.com/WU-BIMAC/W-IDM_OmeroImporterExcelHelperPy) tool to facilitate harvesting Image file names and capturing sub-directory structures into tag annotations.

More information about how to use these tools can be found on [ReadTheDocs](https://omeroimporterpy-docs.readthedocs.io/en/latest/#).