ExampleDatasets

mock / sample dataset xml; Component specific dataset projects will conform to the same format

• ApiCommonDatasets
• MicrobiomeDatasets
• ClinEpiDatasets

Dependencies

• yarn / npm / ant
• WEBAPP_PROP_FILE file (file with one property for the webapp target directory) webappTargetDir=BLAH
• environment variables for GUS_HOME and PROJECT_HOME
• Internal Dependencies
  • ApiCommonWorkflow (ClinEpiWorkflow and MicrobiomeWorkflow are required for those components)

Installation instructions.

• bld ExampleDatasets; generateFromDatasets ExampleDatasets

Operating instructions.

• Reflow commands (rf) to load datasets into GUS instance

  rf list [ready|on_deck|running|failed|done]
  rf run [real|test]
  rf undo [test|real] <step name>
  rf reset test
  rf set [ready|kill|offline|online|stopafter|resume] <stepname_pattern> [undo]
      

Manifest

Datasets/lib/xml/datasets/

Nested xml structure depends on workflow graph structure. For genomics projects, one file per organism and subdirectories for organism specific datasets.