CWL tool wrappers and workflow templates for QBI-Madym, a C++ toolkit for Quantative MRI analysis developed in the Quantitative Biomedical Imaging Laboratory at the University of Manchester.
Developed in the framework of the RADNET project.
madym_T1.cwl
: T1 mapping from Inversion Recovery (IR) or Variable Flip Angle (VFA) datamadym_DCE.cwl
: fits tracer-kinetic models to Dynamic Contrast Enhanced (DCE) time-seriesDCE_deltaCt.cwl
: calculates change in contrast agent concentration C(t) from DCE time-seriesOE_deltaR1.cwl
: calculates change in R1 relaxation rate from Oxygen Enhanced (OE) time-seriesOE_DCE_hypoxia_mapping.cwl
: Generates hypoxia maps from DCE and OE p-value mapsOE_DCE_summary.cwl
[PENDING!]: apply ROI masks to DCE and OE data and calculate summary statistics
OE_IR
:madym_T1 (IR_E)
+OE_deltaR1
DCE_VFA
:madym_T1 (VFA)
+OE_deltaCt
+madym_DCE (ETM)
OE_IR_DCE_VFA
:OE_IR
+DCE_VFA
+ [PENDING!]OE_DCE_summary
See test/README.md for instructions on running tests.