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2 changes: 1 addition & 1 deletion README.md
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<img src="http://www.ucar.edu/highlights/2007/images/globe2.jpg" align="right" />
<img src="https://www.ucar.edu/highlights/2007/images/globe2.jpg" align="right" />

The Integrated Data Viewer (IDV) from Unidata is a framework for analyzing and displaying geoscience data. Developed using Java, VisAD and other component libraries, the IDV emphasizes interactive 3-Dimensional visualization and integration of diverse data types.
2 changes: 1 addition & 1 deletion auxdata/docs/userguide/HelpSet.hs
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<?xml version='1.0' encoding='ISO-8859-1' ?>
<!DOCTYPE helpset PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp HelpSet Version 1.0//EN"
"http://java.sun.com/products/javahelp/helpset_1_0.dtd">
"https://java.sun.com/products/javahelp/helpset_1_0.dtd">

<helpset version="1.0">

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<?xml version='1.0' encoding='ISO-8859-1' ?>
<!DOCTYPE index
PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp Index Version 1.0//EN"
"http://java.sun.com/products/javahelp/index_1_0.dtd">
"https://java.sun.com/products/javahelp/index_1_0.dtd">

<index version="1.0">

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The Integrated Data Viewer (IDV) is a framework for
visualizing and analyzing geoscience data. The IDV release includes a
Java&#153;-based software library, and applications made from that software.
It uses the <a href="http://www.ssec.wisc.edu/~billh/visad.html">VisAD</a>
It uses the <a href="https://www.ssec.wisc.edu/~billh/visad.html">VisAD</a>
library for data and display models as well as other Java utility
packages. It was developed at the Unidata Program Center (UPC), part of the
University Corporation for Atmospheric Research, Boulder, Colorado, which
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<p>
Unidata, (year): Integrated Data Viewer (IDV) version IDV_version
&#91;software&#93;. Boulder, CO:
UCAR/Unidata. (http://doi.org/10.5065/D6RN35XM)
UCAR/Unidata. (https://doi.org/10.5065/D6RN35XM)
<p>
where year is the year in which the work being described was done and
IDV_version is the version of the IDV used. For example:
<p>
Unidata, (2015): Integrated Data Viewer (IDV) version 5.1
&#91;software&#93;. Boulder, CO:
UCAR/Unidata. (http://doi.org/10.5065/D6RN35XM)
UCAR/Unidata. (https://doi.org/10.5065/D6RN35XM)

</faqitem>

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Community sites can receive Level II data using the <a
href="https://www.unidata.ucar.edu/ldm/index.html">
Unidata Local Data Manager (LDM)</a>. Archived Level II data is
available from the <a href="http://www.ncdc.noaa.gov/"> National
available from the <a href="https://www.ncdc.noaa.gov/"> National
Climatic Data Center (NCDC)</a>.<p>

The files should be stored on your file system with each station's files
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<ul>
<li>The University of Wisconsin-Madison (VisAD)
(http://www.ssec.wisc.edu/~billh/visad.html)
(https://www.ssec.wisc.edu/~billh/visad.html)
<li>The Australian Bureau of Meteorology (AIFS)
(http://ssu1.bom.gov.au/pub/ims/aifs.html)
<li>The Apache Software Foundation (http://www.apache.org/)
<li>The Jython project (http://www.jython.org)
<li>The JDOM project (http://www.jdom.org)
<li>The ImageJ project (http://rsb.info.nih.gov/ij/)
<li>The JJ2000 project (http://jpeg2000.epfl.ch/)
<li>The JFreeChart project (http://www.jfree.org/jfreechart/index.php)
<li>The JCommon project (http://www.jfree.org/jcommon/)
<li>The L2FProd.com Common Components 6.9.1 (http://common.L2FProd.com)
<li>The jnumeric package (http://jnumerical.sourceforge.net/)
<li>JAMA: The Java Matrix Package (http://math.nist.gov/javanumerics/jama/)
<li>JTEM: Java tools for experimental mathematics (http://www-sfb288.math.tu-berlin.de/~jtem/numericalMethods/index.html)
<li>The FAMFAMFAM Silk icon set (http://www.famfamfam.com/lab/icons/silk/)
(https://ssu1.bom.gov.au/pub/ims/aifs.html)
<li>The Apache Software Foundation (https://www.apache.org/)
<li>The Jython project (https://www.jython.org)
<li>The JDOM project (https://www.jdom.org)
<li>The ImageJ project (https://rsb.info.nih.gov/ij/)
<li>The JJ2000 project (https://jpeg2000.epfl.ch/)
<li>The JFreeChart project (https://www.jfree.org/jfreechart/index.php)
<li>The JCommon project (https://www.jfree.org/jcommon/)
<li>The L2FProd.com Common Components 6.9.1 (https://common.L2FProd.com)
<li>The jnumeric package (https://jnumerical.sourceforge.net/)
<li>JAMA: The Java Matrix Package (https://math.nist.gov/javanumerics/jama/)
<li>JTEM: Java tools for experimental mathematics (https://www-sfb288.math.tu-berlin.de/~jtem/numericalMethods/index.html)
<li>The FAMFAMFAM Silk icon set (https://www.famfamfam.com/lab/icons/silk/)
</ul>

Please read the different LICENSE files present in the root directory of
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To make the pdf file you first need to have htmldoc installed:
http://www.htmldoc.org/
https://www.htmldoc.org/
This is the utility that generates a pdf from a big html file.
With htmldoc installed and in your path you can just do:
source makepdf.sh
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Expand Up @@ -118,7 +118,7 @@ <h4>Unattended installations</h4>
Using Java Web Start</subhead>


<a href="http://java.sun.com/products/javawebstart/"> Java Web Start</a>
<a href="https://java.sun.com/products/javawebstart/"> Java Web Start</a>
is an application-deployment technology from Sun Microsystems that downloads
all necessary software for an application and then starts the application
with a single click in your Web browser.
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used to create a display where you have complete control over which
coordinates are the axes, how it is colored, and so on.
Use of the VisAD Spread Sheet is not described here. See the VisAD
Spread Sheet document at http://www.ssec.wisc.edu/~curtis/ss.html.
Spread Sheet document at https://www.ssec.wisc.edu/~curtis/ss.html.

[ht::cimg images/OmniControlGui.gif]

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<body>
... misc html ...
<form
action="idv:idv.createDisplay ('http://motherlode.ucar.edu/cgi-bin/dods/nph-nc/dods/casestudies/idvtest/grids/%datetime%_%nwpmodel%.nc', 'windspeed', 'isosurface', 'DefaultView=view1;')">
action="idv:idv.createDisplay ('https://motherlode.ucar.edu/cgi-bin/dods/nph-nc/dods/casestudies/idvtest/grids/%datetime%_%nwpmodel%.nc', 'windspeed', 'isosurface', 'DefaultView=view1;')">
<br>
<b>Date and Time:</b>
<select name="datetime">
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The Storm Track Control displays tropical storm observation and model output tracks.
Currently the IDV supports both
the <a href="http://www.nrlmry.navy.mil/atcf_web/index1.html">Automated Tropical Cyclone Forecasting System (ATCF)</a>
data as well as data from the <a href="http://www.sti.org.cn/">Shanghai Typhoon Institute</a>.
the <a href="https://www.nrlmry.navy.mil/atcf_web/index1.html">Automated Tropical Cyclone Forecasting System (ATCF)</a>
data as well as data from the <a href="https://www.sti.org.cn/">Shanghai Typhoon Institute</a>.
<p>
To load in ATCF data select the [ht::menu Data Special {ATCF Tropical Storm Data}] menu.
This creates a data source with a predefined
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practices&quot;. The whole point of using netCDF is to ensure your
data is complete and self-describing, and can be used by others.
Using conventions helps ensure this. We recommend you use the <a
href="http://cf-pcmdi.llnl.gov/">Climate and Forecast (CF)</a>
convention (http://cf-pcmdi.llnl.gov/) for netCDF data files for the
href="https://cf-pcmdi.llnl.gov/">Climate and Forecast (CF)</a>
convention (https://cf-pcmdi.llnl.gov/) for netCDF data files for the
IDV.</p>

<subhead id="csv" intoc="false">ASCII Text Point Data</subhead>
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<images base="https://www.unidata.ucar.edu/georesources/webcams/images/boulder_co"
name="Boulder, CO"
group="Rockies"
format="yyyyMMddHHmmz" desc="From: http://9news.com">
format="yyyyMMddHHmmz" desc="From: https://9news.com">
<image time="200607251446GMT" file="image_200607251446GMT.jpeg"/>
<image time="200607251430GMT" file="image_200607251430GMT.jpeg"/>
<image time="200607251414GMT" file="image_200607251414GMT.jpeg"/>
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<subhead intoc="false" id="georss">GeoRSS Format</subhead>
The IDV can also read GeoRSS formats. This is a geocoded RSS feed. An
example is the USGS earthquake feed:<br>
http://earthquake.usgs.gov/eqcenter/recenteqsww/catalogs/eqs7day-M2.5.xml
https://earthquake.usgs.gov/eqcenter/recenteqsww/catalogs/eqs7day-M2.5.xml



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Expand Up @@ -48,7 +48,7 @@ <h3>Comma separated numeric values</h3>
href="https://www.unidata.ucar.edu/udunits/udunits-1/udunits.txt
">here</a>. (A complete description of
this format is contained in the VisAD <a
href="http://www.ssec.wisc.edu/~billh/README.text">README.text</a> file.)
href="https://www.ssec.wisc.edu/~billh/README.text">README.text</a> file.)

<p>

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<p>

For use of the Spread Sheet, see the VisAD
Spread Sheet document at <a href="http://www.ssec.wisc.edu/~curtis/ss.html">
http://www.ssec.wisc.edu/~curtis/ss.html</a>.
Spread Sheet document at <a href="https://www.ssec.wisc.edu/~curtis/ss.html">
https://www.ssec.wisc.edu/~curtis/ss.html</a>.

[ht::cimg images/OmniControl.gif {}]

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##Semicolon delimited list of urls pointing to thredds catalogs
idv.cataloglist= http://motherlode.ucar.edu:8080/thredds/idv/rt-models.xml
idv.cataloglist= https://motherlode.ucar.edu:8080/thredds/idv/rt-models.xml



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data. This IDV release includes a software library and a
reference application made from that software. It uses the <a
href="https://www.ssec.wisc.edu/~billh/visad.html">VisAD</a>
(http://www.ssec.wisc.edu/~billh/visad.html) and <a
(https://www.ssec.wisc.edu/~billh/visad.html) and <a
href="https://www.unidata.ucar.edu/netcdf-java">netCDF-Java</a>
(https://www.unidata.ucar.edu/netcdf-java) libraries and other
Java-based utility packages.
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This customization allows new applications to be tailored
to specific datasets and provide customized user interfaces for different
tasks. Examples of specialized IDV applications include the
<a href="http://geon.unavco.org/unavco/IDV_for_GEON.html">GEON IDV</a>
<a href="https://geon.unavco.org/unavco/IDV_for_GEON.html">GEON IDV</a>
(https://geon.unavco.org/unavco/IDV_for_GEON.html) and
<a href="https://www.ssec.wisc.edu/mcidas/software/v/">McIDAS-V</a>
(https://www.ssec.wisc.edu/mcidas/software/v/).
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<a name="simpledateformat"></a>
The set of date and time values for the current time are also available.
The property names are those defined for the Java
<a href="http://java.sun.com/j2se/1.4.2/docs/api/java/text/SimpleDateFormat.html">
<a href="https://java.sun.com/j2se/1.4.2/docs/api/java/text/SimpleDateFormat.html">
SimpleDateFormat</a> class.
<p>
The time properties are:
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</pre>

The generic date format can contain a specification that is used by the Java
<a href="http://java.sun.com/j2se/1.4.2/docs/api/java/text/SimpleDateFormat.html">SimpleDateFormat</a>
<a href="https://java.sun.com/j2se/1.4.2/docs/api/java/text/SimpleDateFormat.html">SimpleDateFormat</a>
and is described in <a href="BasicTags.html#simpledateformat">Basic Tags</a>.

<p>
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into Google Earth. These attributes are the attributes and tags in the KML.
For example, the attribute <i>kml.overlayXY.x</i> ends up being the <i>x</i> attribute
of the <i>overlayXY</i> tag in the KML.
See here <a href="http://code.google.com/apis/kml/documentation/kmlreference.html#screenoverlay">
http://code.google.com/apis/kml/documentation/kmlreference.html#screenoverlay</a> for more info on the KML.
See here <a href="https://code.google.com/apis/kml/documentation/kmlreference.html#screenoverlay">
https://code.google.com/apis/kml/documentation/kmlreference.html#screenoverlay</a> for more info on the KML.
<p>
Here is an example:

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You can provide an absolute path or even a URL as a file:
[isl::xml {
<bundle file="/some/path/test.xidv"/>
<bundle file="http://www.somesite.edu/test.xidv"/>
<bundle file="https://www.somesite.edu/test.xidv"/>
}
]

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Expand Up @@ -144,7 +144,7 @@ proc gen::hook::end {} {
<?xml version='1.0' encoding='ISO-8859-1' ?>
<!DOCTYPE map
PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp Map Version 1.0//EN"
"http://java.sun.com/products/javahelp/map_1_0.dtd">
"https://java.sun.com/products/javahelp/map_1_0.dtd">

<map version="1.0">

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<?xml version='1.0' encoding='ISO-8859-1' ?>
<!DOCTYPE toc
PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp TOC Version 1.0//EN"
"http://java.sun.com/products/javahelp/toc_1_0.dtd">
"https://java.sun.com/products/javahelp/toc_1_0.dtd">

<toc version="1.0">

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So, for example, if you had a property:

<pre>
idv.resource.colortables=%USERPATH%/colortables.xml;http://yourwebsite.edu/specialtables.xml
idv.resource.colortables=%USERPATH%/colortables.xml;https://yourwebsite.edu/specialtables.xml
</pre>
then the IDV would only load in these colortables.

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the RBI file to include other resources.
For example, you could add in an entry:
<pre>
&lt;resource location="http://yourwebsite.edu/specialcolortables.xml"/&gt;
&lt;resource location="https://yourwebsite.edu/specialcolortables.xml"/&gt;
</pre>
to make available some special color tables at a particular
URL.
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<p>

You will also need to install <b>Ant</b> <a
href="http://ant.apache.org/">(http://ant.apache.org/)</a>
href="https://ant.apache.org/">(https://ant.apache.org/)</a>
on your machine. Ant is similar to make - instead of a
<code class="filename">Makefile</code>, Ant uses a <code
class="filename">build.xml</code> file. Be sure to follow
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Community sites can receive Level II data using the <a
href="https://www.unidata.ucar.edu/ldm/index.html">
Unidata Local Data Manager (LDM)</a>. Archived Level II data is
available from the <a href="http://www.ncdc.noaa.gov/"> National
available from the <a href="https://www.ncdc.noaa.gov/"> National
Climatic Data Center (NCDC)</a> (data from NCDC must be un-tarred).

<p>
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<faqitem q="How do I learn to write Jython?" name="top" id="learn">
There are a <a href="http://www.amazon.com/s/ref=nb_ss_gw/002-3107995-7532045?url=search-alias%3Daps&field-keywords=jython&x=0&y=0">number of books</a> available on the language as well as a number of web sites:
There are a <a href="https://www.amazon.com/s/ref=nb_ss_gw/002-3107995-7532045?url=search-alias%3Daps&field-keywords=jython&x=0&y=0">number of books</a> available on the language as well as a number of web sites:
<ul>
<li> <a href="http://www.python.org">http://www.python.org</a>
<li> <a href="http://www.jython.org">http://www.jython.org</a>
<li> <a href="https://www.python.org">https://www.python.org</a>
<li> <a href="https://www.jython.org">https://www.jython.org</a>
</ul>
</faqitem>

<faqitem q="How does Jython work with my data in the IDV?">
The IDV uses the <a href="http://www.ssec.wisc.edu/~billh/visad.html">VisAD</a> package as
The IDV uses the <a href="https://www.ssec.wisc.edu/~billh/visad.html">VisAD</a> package as
as an underlying data model.
There is a <a href="http://www.ssec.wisc.edu/~tomw/visadtutor/">VisAD/Jython Tutorial</a> available.
There is a <a href="https://www.ssec.wisc.edu/~tomw/visadtutor/">VisAD/Jython Tutorial</a> available.
There is also an <a href="https://docs.unidata.ucar.edu/idv/docs/workshop/formulas/index.html">IDV Workshop Section</a> on writing Jython.
</faqitem>

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To make the pdf file you first need to have htmldoc installed:
http://www.htmldoc.org/
https://www.htmldoc.org/
This is the utility that generates a pdf from a big html file.
With htmldoc installed and in your path you can just do:
source makepdf.sh
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&lt;view id="view1" props="size=300:300;"&gt;
&lt;p&gt;

&lt;form action="idv:idv.createDisplay ('http://motherlode.ucar.edu/cgi-bin/dods/nph-nc/dods/casestudies/idvtest/grids/%datetime%_%nwpmodel%.nc', 'u', 'planviewcontour', 'DefaultView=view1;')"&gt;
&lt;form action="idv:idv.createDisplay ('https://motherlode.ucar.edu/cgi-bin/dods/nph-nc/dods/casestudies/idvtest/grids/%datetime%_%nwpmodel%.nc', 'u', 'planviewcontour', 'DefaultView=view1;')"&gt;

Date and Time:
&lt;select name="datetime"&gt;
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<li>The display creation is defined in the &lt;form&gt; tag.
The form action:
<pre>
action="idv:idv.createDisplay('http://motherlode.ucar.edu/cgi-bin/dods/nph-nc/dods/model/%datetime%_%nwpmodel%.nc',
action="idv:idv.createDisplay('https://motherlode.ucar.edu/cgi-bin/dods/nph-nc/dods/model/%datetime%_%nwpmodel%.nc',
'u', 'planviewcontour', 'DefaultView=view1;') "
</pre>
is a call to the IDV and creates a display with
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<pre>
&lt;display
data="http://motherlode.ucar.edu/cgi-bin/dods/nph-nc/dods
data="https://motherlode.ucar.edu/cgi-bin/dods/nph-nc/dods
/casestudies/july18_2002/grids/2002071812_ruc.nc"
param="skewt" display="skewt">
&gt;
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<pre>
&lt;a href="idv:datamanager.createDataSource
('http://motherlode.ucar.edu/cgi-bin/dods/nph-nc/dods/casestudies
('https://motherlode.ucar.edu/cgi-bin/dods/nph-nc/dods/casestudies
/july18_2002/grids/2002071812_ruc.nc');"&gt;
Load OPeNDAP data source &lt;/a&gt;
&lt;p&gt;
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<p>

You will also need to install <b>Ant</b> <a
href="http://ant.apache.org/">(http://ant.apache.org/)</a>
href="https://ant.apache.org/">(https://ant.apache.org/)</a>
on your machine. Ant is similar to make - instead of a
<code class="filename">Makefile</code>, Ant uses a <code
class="filename">build.xml</code> file. Be sure to follow
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<p>

<form action="idv:idv.createDisplay ('http://motherlode.ucar.edu/cgi-bin/dods/nph-nc/dods/casestudies/idvtest/grids/%datetime%_%nwpmodel%.nc', 'u', 'planviewcontour', 'DefaultView=uview1;')">
<form action="idv:idv.createDisplay ('https://motherlode.ucar.edu/cgi-bin/dods/nph-nc/dods/casestudies/idvtest/grids/%datetime%_%nwpmodel%.nc', 'u', 'planviewcontour', 'DefaultView=uview1;')">

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