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pyConTextNLP
pyConTextNLP
 
 
tmp
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.gitignore
.gitignore
 
 
00_Pre-class_materials.ipynb
00_Pre-class_materials.ipynb
 
 
01_NLP_Annotations.ipynb
01_NLP_Annotations.ipynb
 
 
02_MIMICII_Intro_and_Cohorts.ipynb
02_MIMICII_Intro_and_Cohorts.ipynb
 
 
04_NLP_Evaluation_Metrics.ipynb
04_NLP_Evaluation_Metrics.ipynb
 
 
05_NLP_Validation.ipynb
05_NLP_Validation.ipynb
 
 
06_Keyword_Searching_and_ErrorAnalysis.ipynb
06_Keyword_Searching_and_ErrorAnalysis.ipynb
 
 
06_NLP_ErrorAnalysis1.ipynb
06_NLP_ErrorAnalysis1.ipynb
 
 
07a_You_Be_The_NLP_Algorithm.ipynb
07a_You_Be_The_NLP_Algorithm.ipynb
 
 
07b_NLP_ConText_Algorithm.ipynb
07b_NLP_ConText_Algorithm.ipynb
 
 
08_NLP_Regex_for_Concept_Extraction.ipynb
08_NLP_Regex_for_Concept_Extraction.ipynb
 
 
09_NLP_pneumonia_pyConText_targets_and_modifiers.ipynb
09_NLP_pneumonia_pyConText_targets_and_modifiers.ipynb
 
 
10_NLP_DocumentClassification.ipynb
10_NLP_DocumentClassification.ipynb
 
 
11_NLP_ErrorAnalysis2.ipynb
11_NLP_ErrorAnalysis2.ipynb
 
 
12_NLP_Project_Template.ipynb
12_NLP_Project_Template.ipynb
 
 
21_Introduction_to_Annotation.ipynb
21_Introduction_to_Annotation.ipynb
 
 
24_brat_workspace_setup.ipynb
24_brat_workspace_setup.ipynb
 
 
25_Annotation Process.ipynb
25_Annotation Process.ipynb
 
 
27_Calculate_Agreement_for_Brat_Annotations.ipynb
27_Calculate_Agreement_for_Brat_Annotations.ipynb
 
 
28_Additional_Tools.ipynb
28_Additional_Tools.ipynb
 
 
Appendix_text_processing_txtblob.ipynb
Appendix_text_processing_txtblob.ipynb
 
 
Chapman_NLP_Difficult_Short.pdf
Chapman_NLP_Difficult_Short.pdf
 
 
Chapman_NLP_Tutorial-Report-Answers-notebooks.pdf
Chapman_NLP_Tutorial-Report-Answers-notebooks.pdf
 
 
Day4_intro_spacy.ipynb
Day4_intro_spacy.ipynb
 
 
Day4_scispacy_demo.ipynb
Day4_scispacy_demo.ipynb
 
 
Day4_spacy_modular_pipelines.ipynb
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Day4_spacy_ner.ipynb
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Day4_spacy_pneumonia_concept_rules.ipynb
Day4_spacy_pneumonia_concept_rules.ipynb
 
 
Day4_spacy_visualization.ipynb
Day4_spacy_visualization.ipynb
 
 
DocumentClassifier.py
DocumentClassifier.py
 
 
NLP_Process.pptx
NLP_Process.pptx
 
 
NegEx-ConText-Short.pdf
NegEx-ConText-Short.pdf
 
 
Post-class Survey
Post-class Survey
 
 
README.md
README.md
 
 
Syllabus.ipynb
Syllabus.ipynb
 
 
chapman_jbi_2007_annotation_schema.pdf
chapman_jbi_2007_annotation_schema.pdf
 
 
compare_utils.py
compare_utils.py
 
 
itemData.py
itemData.py
 
 
nlp_pneumonia_utils.py
nlp_pneumonia_utils.py
 
 
pycontext_quiz.py
pycontext_quiz.py
 
 
quiz_utils.py
quiz_utils.py
 
 
regular_expression_quiz.py
regular_expression_quiz.py
 
 
visual.py
visual.py
 
 

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DeCart_2019_rulebased_NLP

Repository for the 2019 DeCART (DATA SCIENCE FOR THE HEALTH SCIENCES) University of Utah class in rule-based NLP

This class took place from July 15 to July 18, 2019 at the HSEB 5100C, University of Utah.

More info on the course can be found here:

https://datascience4health.bmi.utah.edu/develop-nlp/

Presenters : Dr.Wendy Chapman, Kelly Peterson, Alec Chapman, Jianlin Shi

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