Resources

Post interesting or useful resources relating to the project here:

Mockrobiota: database of mock communities

• http://mockrobiota.caporasolab.us/

TADA: generative model to augment microbiome datasets

• https://doi.org/10.1093/bioinformatics/btz394
• https://github.com/tada-alg/TADA

Deep Microgen: generative model for longitudinal microbial datasets

• https://doi.org/10.1093/bioinformatics/btad286
• https://github.com/joungmin-choi/DeepMicroGen.

VAE considering compositionality

https://icml-compbio.github.io/2023/papers/WCBICML2023_paper67.pdf

Info on other ordination methods

https://ordination.okstate.edu/