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[ENH] Add logging when dcm2niix skips dcm images #326

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merged 1 commit into from
Nov 11, 2024
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[ENH] Add logging when dcm2niix skips dcm images #326

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8 changes: 4 additions & 4 deletions dcm2bids/dcm2niix_gen.py
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Original file line number Diff line number Diff line change
Expand Up @@ -142,12 +142,12 @@ def execute(self):
shutil.rmtree(self.rm_tmp_dir)
self.logger.info("Temporary dicom directory removed.")

if "Warning" in output or "Error" in output:
if "Warning" in output or "Error" in output or "Skipping" in output:
self.logger.info("Log from dcm2niix execution")
if "Warning" in output:
self.logger.warning(f"{output}")
else:
if "Error" in output:
self.logger.error(f"{output}")
else:
self.logger.warning(f"{output}")
else:
self.logger.debug(f"\n{output}")
self.logger.info("Check log file for dcm2niix output\n")
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