Establishes some general functions relating to single-cell DGE#18

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dtm2451 wants to merge 10 commits intomainfrom

sc-dge-functions

Commits on Dec 29, 2025

Commits on Dec 30, 2025

actually remove ts_log need when 'verbose = FALSE'
dtm2451
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initialize python pseudobulk function, slight parity alignments for R function
dtm2451
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Commits on Jan 5, 2026

python pseudobulk fxn docs update
dtm2451
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pseudobulk functions, multiple: messaging tweaks, skip 'min.cells' trim if would leave none, py-only catch if no metadata would be added, py-only catch and remove fake pseudobulks created by scanpy
dtm2451
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pseudobulk functions: fix 'min.cells' checks
dtm2451
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Commits on Jan 16, 2026

stub file to create 'single_cell/dge' folder
dtm2451
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Commits on Jan 17, 2026

initial commit of deseq2 function
ravipatel4
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Commits on Jan 20, 2026

Revert "initial commit of deseq2 function"
dtm2451
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