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  1. flybody flybody Public

    MuJoCo fruit fly body model and reinforcement learning tasks

    Python 120 13

  2. DECODE DECODE Public

    This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)

    Python 103 28

  3. flyvis flyvis Public

    A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.

    Python 55 14

  4. malis malis Public

    MALIS structured loss function for supervised learning of segmentation and clustering

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  5. wormvae wormvae Public

    Connectome-constrained Latent Variable Model of Whole-brain Neural Activity, ICLR 2022

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  6. snapshotscope snapshotscope Public

    Differentiable 4f microscope/phase mask simulation

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Repositories

Showing 10 of 34 repositories
  • flybody Public

    MuJoCo fruit fly body model and reinforcement learning tasks

    Python 120 Apache-2.0 13 3 0 Updated Mar 3, 2025
  • snapshotscope Public

    Differentiable 4f microscope/phase mask simulation

    Python 7 MIT 2 0 0 Updated Feb 23, 2025
  • flyvis Public

    A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.

    Python 55 MIT 14 1 0 Updated Jan 27, 2025
  • FlySuite Public

    This repository contains the environments and models of the flybody.

    Python 0 MPL-2.0 1 0 0 Updated Nov 22, 2024
  • Jupyter Notebook 0 1 0 0 Updated Nov 18, 2024
  • 0 0 0 0 Updated Oct 29, 2024
  • jhu-janelia-ml-demo Public

    Demo notebooks for JHU bootcamp at Janelia

    Jupyter Notebook 1 0 0 0 Updated Aug 28, 2024
  • malis Public

    MALIS structured loss function for supervised learning of segmentation and clustering

    Python 18 MIT 13 4 1 Updated Jun 24, 2023
  • gunpowder Public Forked from funkelab/gunpowder

    Data loading DAG for Greentea.

    Python 0 58 0 0 Updated Jun 22, 2023
  • DECODE Public

    This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)

    Python 103 GPL-3.0 28 35 0 Updated Jun 22, 2023