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@dosubot dosubot bot added the size:XXL This PR changes 1000+ lines, ignoring generated files. label Oct 10, 2025
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Summary of Changes

Hello @perfectra1n, I'm Gemini Code Assist1! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request introduces a significant overhaul of the LLM feature set, focusing on simplification, efficiency, and maintainability. It re-architects the core LLM pipeline into a leaner, three-stage process and consolidates numerous specialized tools into a few versatile ones. These changes are supported by a new configuration service, a dynamic tool filtering mechanism, and a pipeline adapter to ensure a smooth transition and improved performance across different LLM providers.

Highlights

  • LLM Pipeline Simplification (V2): The core LLM pipeline has been re-architected and simplified from 8 stages down to 3 essential stages: Message Preparation, LLM Execution (including tool handling), and Response Formatting. This new V2 pipeline reduces code complexity by approximately 60%.
  • Tool Consolidation: Twelve legacy LLM tools have been consolidated into four more powerful and unified tools: smart_search, manage_note, navigate_hierarchy, and calendar_integration. This consolidation significantly reduces the token overhead for tool definitions by an estimated 600 tokens.
  • Dynamic Tool Filtering: A new ToolFilterService has been introduced to intelligently filter tools based on the LLM provider (e.g., Ollama, OpenAI) and the user's query intent. This optimizes tool selection, especially for local models like Ollama which perform better with a limited number of relevant tools.
  • Pipeline Adapter for Gradual Migration: A PipelineAdapter now provides a unified interface for both the legacy and new V2 LLM pipelines. It uses feature flags (environment variables or input options) to allow for a seamless and gradual migration to the V2 pipeline, defaulting to V2.
  • Centralized Configuration: A PipelineConfigService has been added to provide centralized, type-safe access to LLM pipeline settings, including parameters for tool execution, streaming, debugging, context management, and provider-specific configurations like Ollama's context window and max tools.
  • New Hierarchy Navigation Tool: A new navigate_hierarchy tool has been added, enabling the LLM to efficiently traverse Trilium's note tree to find children, parents, ancestors, or siblings of a given note.
  • Structured Logging: A StructuredLogger has been implemented to provide more detailed and trackable logging for the LLM pipeline, including request IDs, log levels, and performance timing.
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Code Review

This pull request introduces a major and well-executed refactoring of the LLM feature, including a new V2 pipeline, consolidated tools, a feature-flagging mechanism, improved configuration management, and structured logging. The changes are well-tested and significantly improve the modularity and maintainability of the codebase. My feedback focuses on improving type safety, ensuring consistency, and enhancing error logging for better debuggability.


import { describe, it, expect, beforeEach, vi } from 'vitest';
import type { PipelineV2Input } from './pipeline_v2.js';
import type { Message } from '../ai_interface.js';

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high

This test file is missing several type imports, which will cause compilation errors. Specifically, PipelineV2, AIService, and ChatResponse are used without being imported.

Please add the necessary imports to ensure the file is type-safe and compilable.

Suggested change
import type { Message } from '../ai_interface.js';
import type { Message, AIService, ChatResponse } from '../ai_interface.js';
import { PipelineV2 } from './pipeline_v2.js';

*/
private getBoolOption(key: string, defaultValue: boolean): boolean {
try {
const value = (options as any).getOptionBool(key);

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medium

Casting options to any bypasses TypeScript's type safety. While this might be necessary if the options object is not strongly typed, it's a practice that should be avoided. Consider defining a minimal interface for the parts of options you are using, or use a more specific type assertion than any to improve maintainability and prevent potential runtime errors.

Comment on lines +153 to +160
private getStringOption(key: string, defaultValue: string): string {
try {
const value = (options as any).getOption(key);
return value !== null && value !== undefined ? String(value) : defaultValue;
} catch {
return defaultValue;
}
}

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medium

The getStringOption method is defined but appears to be unused within this class, as it's not called from loadConfiguration. If it's not intended for future use, it should be removed to eliminate dead code.

...response,
pipelineVersion: 'v2',
requestId: response.requestId,
processingTime: response.processingTime

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medium

There's an inconsistency in how processingTime is handled between executeLegacy and executeV2. In executeLegacy, the time measured by the adapter is used for both metrics and the returned output. However, in executeV2, the adapter-measured time is used for metrics, but the processingTime from the V2 pipeline's response is returned in the output.

For consistency, it would be better to use the time measured within the adapter for the output in both methods. This ensures that the reported processing time always reflects the total time taken by the adapter's execution path.

Suggested change
processingTime: response.processingTime
processingTime: processingTime

}

return null;
} catch (error: any) {

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medium

Using any for caught errors is generally discouraged as it bypasses type safety. It's better to type the error as unknown and then perform type checks to safely access its properties. This makes the error handling more robust.

Suggested change
} catch (error: any) {
} catch (error: unknown) {

/**
* Get or create vector search tool
*/
private async getVectorSearchTool(): Promise<any> {

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medium

The method getVectorSearchTool has a return type of Promise<any>. Using any weakens type safety. It would be beneficial to define a specific interface for the vector search tool and use that as the return type. This will improve code clarity and prevent potential runtime errors.

switch (entry.level) {
case LogLevel.ERROR:
if (entry.error) {
log.error(`${formattedMessage}: ${entry.error.message}`);

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medium

When logging an error, only the message property is being logged. This can make debugging difficult as the stack trace is lost. It would be more helpful to log the full error object or at least its stack trace to provide more context for debugging.

Suggested change
log.error(`${formattedMessage}: ${entry.error.message}`);
log.error(`${formattedMessage}: ${entry.error.stack || entry.error.message}`);

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