remove address sanitizer from tests

TravisWheelerLab · Feb 16, 2024 · ed2df43 · ed2df43
1 parent 83ec4a4
commit ed2df43
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Showing 13 changed files with 13 additions and 16 deletions.
diff --git a/README.md b/README.md
@@ -28,10 +28,7 @@ brew install gcc
 ```
 
 
-After cloning the repo, you should initialize and update the submodules. This will happen
-automatically if you use the legacy build system, but there is no harm in doing
-it manually for either the CMake or legacy Make builds.
-
+After cloning the repo, you should initialize and update the submodules. 
 ```
 git clone https://github.com/TravisWheelerLab/AvxWindowFmIndex.git
 git submodule update --init --recursive --remote

diff --git a/test/backtraceTest/makefile b/test/backtraceTest/makefile
@@ -2,7 +2,7 @@ TEST_SRC = backtraceTest.c
 SRC = $(wildcard ../../src/*.c)
 
 
-CFLAGS = -std=c11 -fsanitize=address -Wall -mtune=native -fopenmp -mavx2 -O3
+CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O3
 LDFLAGS = -L../../build
 LDLIBS = -lfastavector_static -ldivsufsort64
 

diff --git a/test/bwtTest/makefile b/test/bwtTest/makefile
@@ -1,7 +1,7 @@
 TEST_SRC = bwtTest.c
 SRC = $(wildcard ../../src/*.c)
 
-CFLAGS = -std=c11 -fsanitize=address -Wall -mtune=native -fopenmp -mavx2 -O3
+CFLAGS = -std=c11  -Wall -mtune=native -fopenmp -mavx2 -O3
 LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
 
 EXE = bwtTest.out

diff --git a/test/createTests/makefile b/test/createTests/makefile
@@ -1,7 +1,7 @@
 TEST_SRC = AwFmCreationTest.c
 SRC = $(wildcard ../../src/*.c)
 
-CFLAGS = -std=c11 -fsanitize=address -Wall -mtune=native -fopenmp -mavx2 -O3
+CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O3
 LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
 
 EXE = createTest.out

diff --git a/test/fileTests/makefile b/test/fileTests/makefile
@@ -1,7 +1,7 @@
 TEST_SRC = AwFmFileTests.c
 SRC = $(wildcard ../../src/*.c)
 
-CFLAGS = -std=c11 -fsanitize=address -Wall -mtune=native -fopenmp -mavx2 -O3
+CFLAGS = -std=c11  -Wall -mtune=native -fopenmp -mavx2 -O3
 LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
 
 EXE = fileTests.out

diff --git a/test/inMemorySaTest/makefile b/test/inMemorySaTest/makefile
@@ -1,7 +1,7 @@
 TEST_SRC = inMemorySaTest.c
 SRC = $(wildcard ../../src/*.c)
 
-CFLAGS = -std=c11 -fsanitize=address -Wall -mtune=native -fopenmp -mavx2 -O3
+CFLAGS = -std=c11  -Wall -mtune=native -fopenmp -mavx2 -O3
 LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
 
 EXE = saInMemTest.out

diff --git a/test/kmerSeedTableTests/makefile b/test/kmerSeedTableTests/makefile
@@ -1,7 +1,7 @@
 TEST_SRC = kmerSeedTableTests.c
 SRC = $(wildcard ../../src/*.c)
 
-CFLAGS = -std=c11 -fsanitize=address -Wall -mtune=native -fopenmp -mavx2 -O3
+CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O3
 LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
 
 EXE = kmerSeedTableTests.out

diff --git a/test/letterTest/makefile b/test/letterTest/makefile
@@ -1,7 +1,7 @@
 TEST_SRC = AwFmLetterTest.c
 SRC = $(wildcard ../../src/*.c)
 
-CFLAGS = -std=c11 -fsanitize=address -Wall -mtune=native -fopenmp -mavx2 -O3
+CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O3
 LDLIBS = ../../lib/FastaVector/build/libfastavector_static.a ../../lib/libdivsufsort/build/lib/libdivsufsort64.a
 
 EXE = letterTest.out

diff --git a/test/multiSequenceIndexTest/makefile b/test/multiSequenceIndexTest/makefile
@@ -1,7 +1,7 @@
 TEST_SRC = AwFmMultiSequenceTest.c
 SRC = $(wildcard ../../src/*.c)
 
-CFLAGS = -std=c11 -fsanitize=address -Wall -mtune=native -fopenmp -mavx2 -O0 -g
+CFLAGS = -std=c11  -Wall -mtune=native -fopenmp -mavx2 -O0 -g
 LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
 
 EXE = multiSequenceTest.out

diff --git a/test/occurrenceTests/makefile b/test/occurrenceTests/makefile
@@ -1,7 +1,7 @@
 TEST_SRC = occurrenceTests.c
 SRC = $(wildcard ../../src/*.c)
 
-CFLAGS = -std=c11 -fsanitize=address -Wall -mtune=native -fopenmp -mavx2 -O0 -g
+CFLAGS = -std=c11  -Wall -mtune=native -fopenmp -mavx2 -O0 -g
 LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
 
 EXE = occurrenceTests.out

diff --git a/test/parallelSearch/makefile b/test/parallelSearch/makefile
@@ -1,7 +1,7 @@
 TEST_SRC = parallelSearchTest.c
 SRC = $(wildcard ../../src/*.c)
 
-CFLAGS = -std=c11 -fsanitize=address -Wall -mtune=native -fopenmp -mavx2 -O0 -g
+CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O0 -g
 LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
 
 EXE = parallelSearchTest.out

diff --git a/test/searchTest/makefile b/test/searchTest/makefile
@@ -1,7 +1,7 @@
 TEST_SRC	= searchTest.c
 SRC 			= $(wildcard ../../src/*.c)
 
-CFLAGS = -std=c11 -fsanitize=address -Wall -mtune=native -fopenmp -mavx2 -O0 -g
+CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O0 -g
 LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
 
 EXE 		= searchTest.out

diff --git a/test/suffixArrayCompressionTests/makefile b/test/suffixArrayCompressionTests/makefile
@@ -1,7 +1,7 @@
 TEST_SRC = saTest.c
 SRC = $(wildcard ../../src/*.c)
 
-CFLAGS = -std=c11 -fsanitize=address -Wall -mtune=native -fopenmp -mavx2 -O0 -g
+CFLAGS = -std=c11  -Wall -mtune=native -fopenmp -mavx2 -O0 -g
 LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
 
 EXE = saTest.out