update to use build dir in include path

this doesn't seem necessary on other systems, but in my exploration of compiling on WSL, this helped in finding the right headers
TravisWheelerLab · Feb 27, 2024 · 6bbeea8 · 6bbeea8
1 parent 8eed250
commit 6bbeea8
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Showing 14 changed files with 14 additions and 14 deletions.
diff --git a/test/backtraceTest/makefile b/test/backtraceTest/makefile
@@ -4,7 +4,7 @@ SRC = $(wildcard ../../src/*.c)
 
 CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O3
 LDFLAGS = -L../../build
-LDLIBS = -lfastavector_static -ldivsufsort64
+LDLIBS = -lfastavector_static -ldivsufsort64 -I../../build/
 
 EXE = backtraceTest.out
 

diff --git a/test/bwtTest/makefile b/test/bwtTest/makefile
@@ -2,7 +2,7 @@ TEST_SRC = bwtTest.c
 SRC = $(wildcard ../../src/*.c)
 
 CFLAGS = -std=c11  -Wall -mtune=native -fopenmp -mavx2 -O3
-LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
+LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a -I../../build/
 
 EXE = bwtTest.out
 

diff --git a/test/createTests/makefile b/test/createTests/makefile
@@ -2,7 +2,7 @@ TEST_SRC = AwFmCreationTest.c
 SRC = $(wildcard ../../src/*.c)
 
 CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O3
-LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
+LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a -I../../build/
 
 EXE = createTest.out
 

diff --git a/test/fileTests/makefile b/test/fileTests/makefile
@@ -2,7 +2,7 @@ TEST_SRC = AwFmFileTests.c
 SRC = $(wildcard ../../src/*.c)
 
 CFLAGS = -std=c11  -Wall -mtune=native -fopenmp -mavx2 -O3
-LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
+LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a -I../../build/
 
 EXE = fileTests.out
 

diff --git a/test/inMemorySaTest/makefile b/test/inMemorySaTest/makefile
@@ -2,7 +2,7 @@ TEST_SRC = inMemorySaTest.c
 SRC = $(wildcard ../../src/*.c)
 
 CFLAGS = -std=c11  -Wall -mtune=native -fopenmp -mavx2 -O3
-LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
+LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a -I../../build/
 
 EXE = saInMemTest.out
 

diff --git a/test/kmerSeedTableTests/makefile b/test/kmerSeedTableTests/makefile
@@ -2,7 +2,7 @@ TEST_SRC = kmerSeedTableTests.c
 SRC = $(wildcard ../../src/*.c)
 
 CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O3
-LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
+LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a -I../../build/
 
 EXE = kmerSeedTableTests.out
 

diff --git a/test/letterTest/makefile b/test/letterTest/makefile
@@ -2,7 +2,7 @@ TEST_SRC = AwFmLetterTest.c
 SRC = $(wildcard ../../src/*.c)
 
 CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O3
-LDLIBS = ../../lib/FastaVector/build/libfastavector_static.a ../../lib/libdivsufsort/build/lib/libdivsufsort64.a
+LDLIBS = ../../lib/FastaVector/build/libfastavector_static.a ../../lib/libdivsufsort/build/lib/libdivsufsort64.a -I../../build/
 
 EXE = letterTest.out
 

diff --git a/test/multiSequenceIndexTest/makefile b/test/multiSequenceIndexTest/makefile
@@ -2,7 +2,7 @@ TEST_SRC = AwFmMultiSequenceTest.c
 SRC = $(wildcard ../../src/*.c) $(wildcard ../../lib/FastaVector/src/*.c)
 
 CFLAGS = -std=c11  -Wall -mtune=native -fopenmp -mavx2 -O0 -g
-LDLIBS = ../../build/libdivsufsort64.a
+LDLIBS = ../../build/libdivsufsort64.a -I../../build/
 
 EXE = multiSequenceTest.out
 

diff --git a/test/occurrenceTests/makefile b/test/occurrenceTests/makefile
@@ -2,7 +2,7 @@ TEST_SRC = occurrenceTests.c
 SRC = $(wildcard ../../src/*.c)
 
 CFLAGS = -std=c11  -Wall -mtune=native -fopenmp -mavx2 -O0 -g
-LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
+LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a -I../../build/
 
 EXE = occurrenceTests.out
 

diff --git a/test/parallelSearch/makefile b/test/parallelSearch/makefile
@@ -2,7 +2,7 @@ TEST_SRC = parallelSearchTest.c
 SRC = $(wildcard ../../src/*.c)
 
 CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O0 -g
-LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
+LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a -I../../build/
 
 EXE = parallelSearchTest.out
 

diff --git a/test/searchTest/makefile b/test/searchTest/makefile
@@ -2,7 +2,7 @@ TEST_SRC	= searchTest.c
 SRC 			= $(wildcard ../../src/*.c)
 
 CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O0 -g
-LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
+LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a -I../../build/
 
 EXE 		= searchTest.out
 

diff --git a/test/sharedLibTest/makefile b/test/sharedLibTest/makefile
@@ -1,7 +1,7 @@
 TEST_SRC = awfmiTest.c
 
 CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O3
-LDLIBS = -lawfmindex
+LDLIBS = -lawfmindex -I../../build/
 
 EXE = sharedLibTest.out
 

diff --git a/test/staticLibTest/makefile b/test/staticLibTest/makefile
@@ -1,7 +1,7 @@
 TEST_SRC = awfmiTest.c
 
 CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O3
-LDFLAGS = -L../../build
+LDFLAGS = -L../../build -I../../build/
 LDLIBS = -lawfmindex
 
 EXE = staticLibTest.out

diff --git a/test/suffixArrayCompressionTests/makefile b/test/suffixArrayCompressionTests/makefile
@@ -2,7 +2,7 @@ TEST_SRC = saTest.c
 SRC = $(wildcard ../../src/*.c)
 
 CFLAGS = -std=c11  -Wall -mtune=native -fopenmp -mavx2 -O0 -g
-LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a
+LDLIBS = ../../build/libfastavector_static.a ../../build/libdivsufsort64.a -I../../build/
 
 EXE = saTest.out