v1.1.9

• Fixed: Meaningless warning in the simplebar template.
• Fixed: Clustering error when heatmap input contains a single column.
• Added: Support for simultaneous tree output of Hub.
• Fixed: Bug when using the + operation with heatmap units.
• Added: Color sorting algorithm with support for custom root colors.
• Added: Two tree construction methods (based on string vectors and data frame row/column names).

Full Changelog: https://tongzhou2017.github.io/itol.toolkit/articles/v1.1.9.html

v1.1.8

Add:

• Citation information while loading itol.toolkit package

• Color distance calculation and gradient color generation

• Color generation by two factors

v1.1.7

• Remove the dependence on the Biostrings package to make the installation easier.

• Debug the file_get_dir and file_get_name functions while without an uplevel path.

v1.1.6

Add search_tree_files function to search the NEWICK format files in a directory.

Add train_theme function to learn themes from template files in a directory.

Update dataset5 files.

Update inbuilt_theme data, which corrected the legend block in the COLOR_STRIP template file.

Fix the create_uint function about the COLOR_STRIP type, which makes the legend function work in the COLOR_STRIP template.

v1.1.5

New:

• Support two factor for shape and color in DATASET_DOMAIN

Fix:

• write_hub error in DATASET_LINECHART, while node data is empty

v1.1.4

Fixed:

• write_hub error in DATASET_DOMAIN, while node data is empty

• write_unit error in LABLE, while the file parameter is empty

v1.1.3

• Set getwd() as default value of file parameter in write_unit function

• Added new case of the file parameter in write_unit function: If the value is a director, then use the key value in unit@profile$name as the output file name.

v1.1.2

Fixed:
the dependence of nchar related to Rcpp package for R version lower than 4.0.0

Video details:
https://www.bilibili.com/video/BV1oV4y197hB/

v1.1.1

Added:

• description in Get_Start doc

Fixed:

• DATASET_EXTERNALSHAPE loss field_length error
• DATASET_SYMBOL no legend
• simplify key parameter description in create_unit function

v1.1.0

New features:
DATASET_STYLE, DATASET_COLORSTRIP, TREE_COLORS range, DATASET_SYMBOL, DATASET_DOMAINS, DATASET_CONNECTION, DATASET_MULTIBAR, DATASET_BINARY, DATASET_TEXT, DATASET_EXTERNALSHAPE, DATASET_PIECHART support full color palette(table2itol wesanderson npg aaas nejm lancet jama jco ucscgb d3 igv locuszoom uchicago simpsons futurama rickandmorty startrek tron gsea material BrBG PiYG PRGn PuOr RdBu RdGy RdYlBu RdYlGn Spectral Accent Dark2 Paired Pastel1 Pastel2 Set1 Set2 Set3 Blues BuGn BuPu GnBu Greens Greys Oranges OrRd PuBu PuBuGn PuRd Purples RdPu Reds YlGn YlGnBu YlOrBr YlOrRd)

user level add DATASET_MULTIBAR, DATASET_LINECHART, DATASET_PIECHART, DATASET_ALIGNMENT, DATASET_IMAGE, POPUP_INFO support

create_hub supports direct input of phylo objects for the tree parameter, not just the tree file path

Fixed:
wesanderson color palette random picking function changed from runif to sample, fixed the problem of repeated color matching