Adapt algorithms with names starting with [e-i] (#34)

* feat: adapt algorithms with names starting with [e-i]

* feat: fix eif version

* fix(eif): use older version of Cython to avoid incompatibilities

eif/Dockerfile

@@ -1,6 +1,6 @@
 # Separate build image!
 #----------------------------
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5 as build
+FROM ghcr.io/timeeval/python3-base:0.3.0 as build
 
 # install build dependencies
 RUN apt-get update && apt-get install -y --no-install-recommends build-essential;
@@ -9,22 +9,24 @@ RUN python -m venv --system-site-packages /opt/venv
 ENV PATH="/opt/venv/bin:$PATH"
 
 # build and install dependencies
-RUN pip install cython
-COPY requirements.txt .
-RUN pip install -r ./requirements.txt
+RUN pip install cython==0.29.36
+COPY requirements.txt /app/
+RUN pip install -r /app/requirements.txt
 #----------------------------
 
 # inherit from the python3-base base image
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5 as runtime
+FROM ghcr.io/timeeval/python3-base:0.3.0 as runtime
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 # specify the main entrypoint to your algorithm code
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
+ENV PATH="/opt/venv/bin:$PATH"
+
 COPY --from=build /opt/venv /opt/venv
 
 # add the algorithm code (in this case only a single file)
-COPY algorithm.py .
-
-ENV PATH="/opt/venv/bin:$PATH"
+COPY algorithm.py /app/
+COPY manifest.json /app/

eif/manifest.json

@@ -2,7 +2,7 @@
     "title": "Extended Isolation Forest (EIF)",
     "description": "Extenstion to the basic isolation forest. Implementation of https://doi.org/10.1109/TKDE.2019.2947676. Code from https://github.com/sahandha/eif",
     "inputDimensionality": "multivariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "S. Hariri, M. Carrasco Kind, R. J. Brunner",
     "type": "Detector",
     "language": "Python",

eif/requirements.txt

@@ -1,4 +1,4 @@
 numpy
 cython
 pathlib
-eif
+eif==2.0.2

encdec_ad/Dockerfile

@@ -1,6 +1,7 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-torch:0.2.5
+FROM ghcr.io/timeeval/python3-torch:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
@@ -9,4 +10,5 @@ COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
 COPY encdec_ad /app/encdec_ad
+COPY manifest.json /app/
 COPY algorithm.py /app/

encdec_ad/manifest.json

@@ -2,7 +2,7 @@
   "title": "EncDec-AD",
   "description": "Implementation of https://arxiv.org/pdf/1607.00148.pdf",
   "inputDimensionality": "multivariate",
-  "version": "0.1",
+  "version": "0.3.0",
   "authors": "Pankaj Malhotra, Anusha Ramakrishnan, Gaurangi Anand, Lovekesh Vig, Puneet Agarwal, Gautam Shroff",
   "language": "Python",
   "type": "Detector",

ensemble_gi/Dockerfile

@@ -1,11 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 COPY requirements.txt /app/
 RUN pip install -r requirements.txt
 
 COPY ensemble_gi /app/ensemble_gi
+COPY manifest.json /app/
 COPY algorithm.py /app/

ensemble_gi/manifest.json

@@ -2,7 +2,7 @@
     "title": "Ensemble GI",
     "description": "Implementation of https://doi.org/10.5441/002/edbt.2020.09",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Yifeng Gao, Jessica Lin, Constantin Brif",
     "language": "Python",
     "type": "Detector",

fast_mcd/Dockerfile

@@ -1,11 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 # install algorithm dependencies
 COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
+COPY manifest.json /app/
 COPY algorithm.py /app/

fast_mcd/manifest.json

@@ -2,7 +2,7 @@
     "title": "Fast-MCD",
     "description": "Implementation of https://doi.org/10.2307/1270566",
     "inputDimensionality": "multivariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Peter J. Rousseeuw, Katrien Van Driessen",
     "language": "Python",
     "type": "Detector",

fft/Dockerfile

@@ -1,6 +1,7 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
@@ -9,4 +10,5 @@ COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
 COPY fft /app/fft
+COPY manifest.json /app/
 COPY algorithm.py /app

fft/manifest.json

@@ -2,7 +2,7 @@
     "title": "FFT",
     "description": "Implementation of https://dl.acm.org/doi/10.5555/1789574.1789615 proudly provided by members of the HPI AKITA project.",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Faraz Rasheed, Peter Peng, Reda Alhajj, Jon Rokne",
     "language": "Python",
     "type": "Detector",

generic_rf/Dockerfile

@@ -1,12 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
-COPY ./requirements.txt .
-RUN pip install -r requirements.txt
+COPY ./requirements.txt /app/
+RUN pip install -r /app/requirements.txt
 
-COPY ./algorithm.py .
-COPY ./model.py .
-COPY ./manifest.json .
+COPY ./algorithm.py /app/
+COPY ./model.py /app/
+COPY ./manifest.json /app/

generic_rf/manifest.json

@@ -3,7 +3,7 @@
     "description": "A generic windowed forecasting method using random forest regression (requested by RollsRoyce). The forecasting error is used as anomaly score.",
     "inputDimensionality": "univariate",
     "learningType": "semi-supervised",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Sebastian Schmidl",
     "language": "Python",
     "type": "Detector",

generic_xgb/Dockerfile

@@ -1,12 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
-COPY ./requirements.txt .
-RUN pip install -r requirements.txt
+COPY ./requirements.txt /app/
+RUN pip install -r /app/requirements.txt
 
-COPY ./algorithm.py .
-COPY ./model.py .
-COPY ./manifest.json .
+COPY ./algorithm.py /app/
+COPY ./model.py /app/
+COPY ./manifest.json /app/

generic_xgb/manifest.json

@@ -3,7 +3,7 @@
     "description": "A generic windowed forecasting method using XGBoost regression (requested by RollsRoyce). The forecasting error is used as anomaly score.",
     "inputDimensionality": "univariate",
     "learningType": "semi-supervised",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Sebastian Schmidl",
     "language": "Python",
     "type": "Detector",

grammarviz3/Dockerfile

@@ -1,4 +1,4 @@
-FROM gitlab.hpi.de/akita/dependency_proxy/containers/maven:3-openjdk-11-slim as build
+FROM maven:3-openjdk-11-slim as build
 
 WORKDIR /app
 
@@ -7,10 +7,12 @@ COPY src src
 RUN mvn package -PsingleCLI -DskipTests
 
 
-FROM registry.gitlab.hpi.de/akita/i/java-base:0.2.5
+FROM ghcr.io/timeeval/java-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses="GPL-2.0"
 
 ENV ALGORITHM_MAIN="/app/algorithm.jar"
 
+COPY manifest.json /app/
 COPY --from=build /app/target/grammarviz2-0.0.1-SNAPSHOT-jar-with-dependencies.jar ${ALGORITHM_MAIN}

grammarviz3/manifest.json

@@ -2,7 +2,7 @@
     "title": "GrammarViz",
     "description": "Implementation of https://doi.org/10.1145/3051126.",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Pavel Senin, Jessica Lin, Xing Wang, Tim Oates, Sunil Gandhi, Arnold P. Boedihardjo, Crystal Chen, Susan Frankenstein",
     "language": "Java",
     "type": "Detector",

grammarviz3_multi/Dockerfile

@@ -1,14 +1,16 @@
-FROM gitlab.hpi.de/akita/dependency_proxy/containers/maven:3-openjdk-11-slim as build
+FROM maven:3-openjdk-11-slim as build
 
 COPY pom.xml /app/
 COPY src /app/src
 RUN cd /app && \
     mvn package -PsingleCLI -DskipTests
 
-FROM registry.gitlab.hpi.de/akita/i/java-base:0.2.5
+FROM ghcr.io/timeeval/java-base:0.3.0
 
 LABEL maintainer="[email protected];[email protected]"
+LABEL org.opencontainers.image.licenses="GPL-2.0"
 
 ENV ALGORITHM_MAIN="/app/algorithm.jar"
 
+COPY manifest.json /app/
 COPY --from=build /app/target/grammarviz2-0.0.1-SNAPSHOT-jar-with-dependencies.jar ${ALGORITHM_MAIN}

grammarviz3_multi/manifest.json

@@ -2,7 +2,7 @@
     "title": "GrammarViz-Multivariate",
     "description": "Multivariate extension of the GrammarViz3 algorithm.",
     "inputDimensionality": "multivariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Yannik Schröder, Niklas Köhnecke",
     "language": "Java",
     "type": "Detector",

hbos/Dockerfile

@@ -1,11 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/pyod:0.2.5
+FROM ghcr.io/timeeval/pyod:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 # install algorithm dependencies
 COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
-COPY algorithm.py .
+COPY manifest.json /app/
+COPY algorithm.py /app/

hbos/manifest.json

@@ -2,7 +2,7 @@
     "title": "HBOS",
     "description": "Implementation of https://citeseerx.ist.psu.edu/viewdoc/citations;jsessionid=2B4E3FB2BB07448253B4D45C3DAC2E95?doi=10.1.1.401.5686.",
     "inputDimensionality": "multivariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Markus Goldstein, Andreas Dengel",
     "language": "Python",
     "type": "Detector",

health_esn/Dockerfile

@@ -1,11 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
-COPY requirements.txt .
-RUN pip install -r requirements.txt
+COPY requirements.txt /app/
+RUN pip install -r /app/requirements.txt
 
-COPY health_esn ./health_esn
-COPY algorithm.py .
+COPY health_esn /app/health_esn/
+COPY manifest.json /app/
+COPY algorithm.py /app/

health_esn/manifest.json

@@ -2,7 +2,7 @@
     "title": "HealthESN",
     "description": "Implementation of https://doi.org/10.1007/s00521-018-3747-z",
     "inputDimensionality": "multivariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Qing Chen, Anguo Zhang, Tingwen Huang, Qianping He, Yongduan Song",
     "language": "Python",
     "type": "Detector",

hif/Dockerfile

@@ -1,12 +1,14 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses="GPL-2.0"
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 # install algorithm dependencies
 COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
+COPY manifest.json /app/
 COPY hif.py /app/
 COPY algorithm.py /app/

hif/manifest.json

@@ -2,7 +2,7 @@
     "title": "Hybrid Isolation Forest (HIF)",
     "description": "Implementation of https://arxiv.org/abs/1705.03800",
     "inputDimensionality": "multivariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Pierre-Franccois Marteau, Saeid Soheily-Khah, Nicolas Bechet",
     "language": "Python",
     "type": "Detector",

hotsax/Dockerfile

@@ -1,12 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses="GPL-2.0"
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
-COPY requirements.txt .
+COPY requirements.txt /app/
 RUN set -eux; \
-    pip install --no-cache-dir -r requirements.txt; \
+    pip install --no-cache-dir -r /app/requirements.txt; \
     find /usr/local -depth \
 		\( \
 			\( -type d -a \( -name test -o -name tests -o -name idle_test \) \) \
@@ -15,5 +16,6 @@ RUN set -eux; \
 		\) -exec rm -rf '{}' +; \
     rm -rf /tmp/* /var/tmp/* ~/.cache/pip
 
-COPY saxpy ./saxpy
-COPY algorithm.py .
+COPY saxpy /app/saxpy/
+COPY manifest.json /app/
+COPY algorithm.py /app/

hotsax/manifest.json

@@ -2,7 +2,7 @@
     "title": "HOT SAX",
     "description": "Implementation of https://doi.org/10.1109/ICDM.2005.79.",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Eamonn Keogh, Jessica Lin, Ada Fu",
     "language": "Python",
     "type": "Detector",

hybrid_knn/Dockerfile

@@ -1,6 +1,7 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-torch:0.2.5
+FROM ghcr.io/timeeval/python3-torch:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 

hybrid_knn/manifest.json

@@ -2,7 +2,7 @@
   "title": "Hybrid KNN",
   "description": "Implementation of https://www.hindawi.com/journals/cin/2017/8501683/",
   "inputDimensionality": "multivariate",
-  "version": "0.1",
+  "version": "0.3.0",
   "authors": "Hongchao Song, Zhuqing Jiang, Aidong Men, Bo Yang",
   "language": "Python",
   "type": "Detector",