Adapt and build base images (#21)

* feat: adapt base images to new CI workflow

* feat: add version files

0-base-images/java-base/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2020-2023 Phillip Wenig and Sebastian Schmidl
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

0-base-images/java-base/entrypoint.sh

@@ -23,11 +23,18 @@ if [[ ! -z "$LOCAL_UID" ]] && [[ ! -z "$LOCAL_GID" ]]; then
     chown -R "$Z_UID:$Z_GID" .
 fi
 
-# Either run algorithm or the supplied executable
-if [[ "$1" = "execute-algorithm" ]]; then
+# check and execute command
+if [[ "$1" == "manifest" ]]; then
+    # output the algorithm manifest
+    cat /app/manifest.json
+
+elif [[ "$1" == "execute-algorithm" ]]; then
+    # run algorithm
     shift
     exec setpriv --reuid=$Z_UID --regid=$Z_GID --init-groups -- java -jar "$ALGORITHM_MAIN" "$@"
+
 else
+    # just run supplied command inside container
     exec setpriv --reuid=$Z_UID --regid=$Z_GID --init-groups -- "$@"
 fi
 

0-base-images/java-base/version.txt

@@ -0,0 +1 @@
+0.3.0

0-base-images/python2-base/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2020-2023 Phillip Wenig and Sebastian Schmidl
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

0-base-images/python2-base/entrypoint.sh

@@ -23,11 +23,18 @@ if [[ ! -z "$LOCAL_UID" ]] && [[ ! -z "$LOCAL_GID" ]]; then
     chown -R "$Z_UID:$Z_GID" .
 fi
 
-# Either run algorithm or the supplied executable
-if [[ "$1" = "execute-algorithm" ]]; then
+# check and execute command
+if [[ "$1" == "manifest" ]]; then
+    # output the algorithm manifest
+    cat /app/manifest.json
+
+elif [[ "$1" == "execute-algorithm" ]]; then
+    # run algorithm
     shift
     exec setpriv --reuid=$Z_UID --regid=$Z_GID --init-groups -- python "$ALGORITHM_MAIN" "$@"
+
 else
+    # just run supplied command inside container
     exec setpriv --reuid=$Z_UID --regid=$Z_GID --init-groups -- "$@"
 fi
 

0-base-images/python2-base/version.txt

@@ -0,0 +1 @@
+0.3.0

0-base-images/python3-base/Dockerfile

@@ -12,6 +12,8 @@ VOLUME ["/data", "/results"]
 
 WORKDIR /app
 
+COPY entrypoint.sh /entrypoint.sh
+
 COPY requirements.txt /tmp/
 # install requirements and cleanup afterwards (also removes tests and cached cython files of the dependencies)
 RUN set -eux; \
@@ -24,7 +26,5 @@ RUN set -eux; \
 		\) -exec rm -rf '{}' +; \
     rm -rf /tmp/* /var/tmp/* ~/.cache/pip
 
-COPY entrypoint.sh /entrypoint.sh
-
 ENTRYPOINT [ "/entrypoint.sh" ]
 CMD [ "execute-algorithm" ]

0-base-images/python36-base/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2020-2023 Phillip Wenig and Sebastian Schmidl
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

0-base-images/python36-base/entrypoint.sh

@@ -23,11 +23,18 @@ if [[ ! -z "$LOCAL_UID" ]] && [[ ! -z "$LOCAL_GID" ]]; then
     chown -R "$Z_UID:$Z_GID" .
 fi
 
-# Either run algorithm or the supplied executable
-if [[ "$1" = "execute-algorithm" ]]; then
+# check and execute command
+if [[ "$1" == "manifest" ]]; then
+    # output the algorithm manifest
+    cat /app/manifest.json
+
+elif [[ "$1" == "execute-algorithm" ]]; then
+    # run algorithm
     shift
     exec setpriv --reuid=$Z_UID --regid=$Z_GID --init-groups -- python "$ALGORITHM_MAIN" "$@"
+
 else
+    # just run supplied command inside container
     exec setpriv --reuid=$Z_UID --regid=$Z_GID --init-groups -- "$@"
 fi
 

0-base-images/python36-base/version.txt

@@ -0,0 +1 @@
+0.3.0

0-base-images/r-base/Dockerfile

@@ -49,7 +49,6 @@ RUN set -eux; \
     rm -rf /tmp/* /var/tmp/*
 
 # Setup TimeEval integration
-
 VOLUME ["/data", "/results"]
 
 WORKDIR /app

0-base-images/r4-base/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2020-2023 Phillip Wenig and Sebastian Schmidl
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

0-base-images/r4-base/entrypoint.sh

@@ -23,11 +23,18 @@ if [[ ! -z "$LOCAL_UID" ]] && [[ ! -z "$LOCAL_GID" ]]; then
     chown -R "$Z_UID:$Z_GID" .
 fi
 
-# Either run algorithm or the supplied executable
-if [[ "$1" = "execute-algorithm" ]]; then
+# check and execute command
+if [[ "$1" == "manifest" ]]; then
+    # output the algorithm manifest
+    cat /app/manifest.json
+
+elif [[ "$1" == "execute-algorithm" ]]; then
+    # run algorithm
     shift
     exec setpriv --reuid=$Z_UID --regid=$Z_GID --init-groups -- Rscript "$ALGORITHM_MAIN" "$@"
+
 else
+    # just run supplied command inside container
     exec setpriv --reuid=$Z_UID --regid=$Z_GID --init-groups -- "$@"
 fi
 

0-base-images/r4-base/version.txt

@@ -0,0 +1 @@
+0.3.0

0-base-images/rust-base/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2020-2023 Phillip Wenig and Sebastian Schmidl
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

0-base-images/rust-base/entrypoint.sh

@@ -23,11 +23,18 @@ if [[ ! -z "$LOCAL_UID" ]] && [[ ! -z "$LOCAL_GID" ]]; then
     chown -R "$Z_UID:$Z_GID" .
 fi
 
-# Either run algorithm or the supplied executable
-if [[ "$1" = "execute-algorithm" ]]; then
+# check and execute command
+if [[ "$1" == "manifest" ]]; then
+    # output the algorithm manifest
+    cat /app/manifest.json
+
+elif [[ "$1" == "execute-algorithm" ]]; then
+    # run algorithm
     shift
     exec setpriv --reuid=$Z_UID --regid=$Z_GID --init-groups -- "$ALGORITHM_MAIN" "$@"
+
 else
+    # just run supplied command inside container
     exec setpriv --reuid=$Z_UID --regid=$Z_GID --init-groups -- "$@"
 fi
 

0-base-images/rust-base/version.txt

@@ -0,0 +1 @@
+0.3.0