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update site
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TiagoOlivoto committed Nov 9, 2021
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1 change: 0 additions & 1 deletion README.Rmd
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Expand Up @@ -77,7 +77,6 @@ soy <- analyze_objects(img, marker = "id")
soy$statistics
```


# Disease severity

```{r fig.width=12, fig.height=3}
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15 changes: 8 additions & 7 deletions README.md
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Expand Up @@ -24,6 +24,7 @@ will help you to:
- Measure disease severity;
- Count the number of lesions;
- Obtain the shape of lesions;
- Produce Standard Area Diagrams;
- Count objects in an image;
- Get object features (area, perimeter, radius, circularity,
eccentricity, solidity);
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``` r
library(pliman)
# |=======================================================|
# | Tools for Plant Image Analysis (pliman 0.3.0) |
# | Tools for Plant Image Analysis (pliman 1.0.0) |
# | Author: Tiago Olivoto |
# | Type 'vignette('pliman_start')' for a short tutorial |
# | Visit 'https://bit.ly/pliman' for a complete tutorial |
# |=======================================================|
img <- image_import(image_pliman("soybean_touch.jpg"), plot = TRUE)
img <-image_pliman("soybean_touch.jpg", plot = TRUE)
soy <- analyze_objects(img, marker = "id")
```

Expand All @@ -104,10 +105,10 @@ soy$statistics
# Disease severity

``` r
img <- image_import(image_pliman("sev_leaf.jpg"))
healthy <- image_import(image_pliman("sev_healthy.jpg"))
symptoms <- image_import(image_pliman("sev_sympt.jpg"))
background <- image_import(image_pliman("sev_back.jpg"))
img <-image_pliman("sev_leaf.jpg")
healthy <-image_pliman("sev_healthy.jpg")
symptoms <-image_pliman("sev_sympt.jpg")
background <-image_pliman("sev_back.jpg")
image_combine(img, healthy, symptoms, background, ncol = 4)
```

Expand All @@ -126,7 +127,7 @@ sev <-
``` r
sev$severity
# healthy symptomatic
# 1 89.21025 10.78975
# 1 89.04464 10.95536
```

`pliman` takes the advantage of several powerful functions from [EBImage
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2 changes: 1 addition & 1 deletion cran-comments.md
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@@ -1,5 +1,5 @@
## Release summary
This is a minor release (0.1.0) that includes new functions, minor improvements. I changed the R dependency to R (>= 4.1) to fix the bug with EBImage installation. See `NEWS.md` for additional information
This is a major release (1.0.0) that includes new features, bug corrections, and minor improvements. Please, see `NEWS.md` for additional information.


## Test environments
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84 changes: 43 additions & 41 deletions docs/articles/phytopatometry.html

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2 changes: 1 addition & 1 deletion docs/articles/pliman_start.html

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15 changes: 8 additions & 7 deletions docs/index.html

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2 changes: 1 addition & 1 deletion docs/pkgdown.yml
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Expand Up @@ -8,7 +8,7 @@ articles:
phytopatometry: phytopatometry.html
pliman_start: pliman_start.html
segmentation: segmentation.html
last_built: 2021-11-09T18:14Z
last_built: 2021-11-09T19:19Z
urls:
reference: https://tiagoolivoto.github.io/pliman//reference
article: https://tiagoolivoto.github.io/pliman//articles
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