Skip to content
Open
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions celltypist/command_line.py
Original file line number Diff line number Diff line change
Expand Up @@ -48,6 +48,7 @@ def show_help_and_exit(message: str):
@click.option("--update-models", is_flag=True, default=False, help="Download the latest models from the remote server.")
@click.option("--show-models", is_flag=True, default=False, help="Show all the available models and their descriptions.")
@click.option("--quiet", is_flag=True, default=False, help="Hide the banner and configuration information during the run.")
@click.version_option()
def main(indata: str, model: str, transpose_input: bool, gene_file: str, cell_file: str, mode: str, p_thres: float, majority_voting: bool, over_clustering: str, use_GPU: bool, min_prop: float,
outdir: str, prefix: str, xlsx: bool, plot_results: bool, update_models: bool, show_models: bool, quiet: bool):
"""Celltypist: a tool for semi-automatic cell type annotation"""
Expand Down