v0.2.2

Changes

• fix R version for sequenza
• hard code VROOM_SIZE
• change NF-core modules git submodule to TRON fork
• change test dataset to a mock reference genome that has full chromosomes 6 and 22
• Enable the use of mamba in the CI environment

v0.2.1

Changes

• Adds a parameter for the value VROOM_CONNECTION_SIZE environment variable during sequenza execution. Also increases its default value from 50000000 to 500000000. For some samples Sequenza fails when this value is too low.

Release v0.2.0

Changes

• Integrate Sequenza as another copy number caller
• Changes the name from tronflow-cnvkit to tronflow-copy-number-calling

Release v0.1.1

Changes

• Tentative release increasing the allowed time to create a conda environment

Release v0.1.0

First release !