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@priesgo priesgo released this 04 Jan 14:42
· 32 commits to master since this release
v0.17.0
3c15c95
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Learn about vigilant mode.

Changes

  • Fixes #26 and #41 by annotating VCFs with homoplasmic problematic sites from DeMaio. These are annotated in the field INFO/problematic. Also, all mutations at beginning and end of the genome are now filtered out.
  • Changes the default VAFs to classify mutations and introduces a new classification. Low frequency are those below 2 % VAF, subclonal are above or equal 2 % and below 50 %, low quality clonal are above or equal 50 % and below 80 %; the rest are considered clonal.
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