RBApy version 2.0.1

Make the code compatible with new versions of pandas package (for prerba module)

RBApy version 2.0

Compatibility with different Linear Programming solvers: CPLEX (need a licence), Gurobi (need a licence) and swiglpk (free)
Addition of command line interface: generate-rba-model and solve-rba-model
Now can be installed with pip
Available on PyPi under the name rbapy (https://pypi.org/project/rbapy/)
Addition of another sample directory named sample_input_small containing Bacillus subtilis information for model building
Use of the new Uniprot restAPI (https://www.uniprot.org/help/programmatic_access) to download Uniprot information

RBApy_v1.1

Addition of a new optional parameter in the file params.in named INTERFACE_COMPARTMENTS.
INTERFACE_COMPARTMENTS refers to SBML compartments IDs, separated by comma
RBApy will automatically add a michaelis-menten (MM) function for the efficiencies of the transporters located at the interfaces of the compartments.

For instance: INTERFACE_COMPARTMENTS= e,c., (which corresponds to the plasmic membrane).
All efficiencies of transporters located in the plasmic membrane will have a MM form.

RBApy_version1.0

First release (version 1.0) of RBApy for the generation, curation, calibration and simulation (in steady-state) of bacterial RBA models.