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@SynBioDex

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology

As well as several software projects, this organization includes respositories containing information about the SBOL/SBOL Visual standards and their development.

SbolStandardWebsite is the repo from which http://www.sbolstandard.org/ is generated.

A summary of recent activity on the specification (rather than software) repos within the SynBioDex organization is generated by SynBioDex/activity-summaries and accessible at: https://synbiodex.github.io/activity-summaries/

SBOL

  • SBOL-specification: the SBOL Standard
  • SEPs: SBOL Enhancement Proposals - proposals for changes to the SBOL standard

SBOL Visual

SBOL and SBOL Visual

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  1. SBOL-specification Public

    The Synthetic Biology Open Language (SBOL)

    TeX 18 9

  2. SBOL-visual Public

    The reference implementation of the SBOL Visual standard

    HTML 34 16

  3. pySBOL3 Public

    Native python implementation of SBOL 3.0 specification

    Python 39 18

  4. sboljs3 Public

    A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js

    TypeScript 6 1

  5. SBOL-utilities Public

    Command-line utilities and scripts for manipulating SBOL data

    JavaScript 18 30

  6. SBOL-examples Public

    A repository to share/discuss/ask/propose how to represent examples using SBOL and SBOLVisual.

    Jupyter Notebook 3 4

Repositories

Showing 10 of 56 repositories
  • SBOL-Converter Public

    SBOL Java Converter

    Java 0 Apache-2.0 0 7 0 Updated Apr 19, 2025
  • SBOLCanvas Public
    HTML 14 Apache-2.0 6 26 0 Updated Apr 17, 2025
  • Excel-to-SBOL Public
    Python 4 BSD-3-Clause 8 14 0 Updated Apr 17, 2025
  • SBOL-utilities Public

    Command-line utilities and scripts for manipulating SBOL data

    JavaScript 18 MIT 30 107 (2 issues need help) 12 Updated Apr 17, 2025
  • libSBOLj Public

    Java Library for Synthetic Biology Open Language (SBOL)

    Java 39 Apache-2.0 25 64 7 Updated Apr 17, 2025
  • Xperimental-Data-Connector Public Forked from SynBioDex/Excel-to-SBOL

    XDC uses excel2flapjack and excel2sbol and interlinks the data

    Python 2 BSD-3-Clause 8 6 1 Updated Apr 16, 2025
  • libSBOLj3 Public Forked from goksel/libSBOLj3_moved_to_SynBioDex

    A Java library for the Synthetic Biology Open Language version 3

    Java 1 Apache-2.0 3 4 0 Updated Apr 16, 2025
  • Python 1 BSD-3-Clause 0 4 0 Updated Apr 2, 2025
  • SBOL-Notebooks Public

    A repository containing Jupyter Notebooks for SBOL

    Jupyter Notebook 0 1 17 5 Updated Apr 2, 2025
  • pySBOL3 Public

    Native python implementation of SBOL 3.0 specification

    Python 39 MIT 18 45 (4 issues need help) 2 Updated Mar 26, 2025