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Refactor SEM Specification #203

Merged
merged 56 commits into from
May 31, 2024
+1,328 −1,331
Merged

Refactor SEM Specification #203

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22542ea
SemSpecification base type
alyst Apr 28, 2024
8d41874
SemSpecification: use in methods
alyst Apr 28, 2024
239a942
rename identifier -> param
alyst Apr 28, 2024
61282bc
ParTable: columns[:identifier] => columns[:param]
alyst Apr 28, 2024
a0e76cc
getindex(EnsParTable, i) instead of get_group()
Mar 17, 2024
e177e29
replace no-op ctors with convert(T, obj)
Mar 17, 2024
161dc58
ParamTable: convert vars from Dict to fields
alyst May 27, 2024
afaff2c
ParamTable: update StenGraph-based ctor
alyst May 27, 2024
6308cdd
rename Base.sort() to sort_vars()
alyst May 27, 2024
92730f8
don't import ==
Mar 11, 2024
83e7828
don't import push!()
Mar 11, 2024
a2eed98
don't import DataFrame
alyst May 2, 2024
458f1cf
remove no-op push!()
Mar 23, 2024
ff2140a
ParTable ctor: simplify rows code
alyst May 27, 2024
edc8443
ParTable: full support for Iterator iface
alyst May 27, 2024
018b077
RAMConstant: simplify
Mar 9, 2024
70e6199
RAMMatrices: optimize F_indices init
Mar 9, 2024
9bf094e
RAMMatrices: declare types for all fields
Mar 9, 2024
9a5842e
RAMMatrices: option to keep zero constants
Mar 10, 2024
296d827
nonunique() helper function
Apr 4, 2024
dec1f4d
add check_vars() and check_params()
alyst May 3, 2024
a7a17df
RAMMatrices ctor: dims and vars checks
alyst May 3, 2024
25cd574
RAMMatrices: cleanup params index
alyst May 3, 2024
98b74d9
include RAMMatrices before EnsParTable
alyst Mar 18, 2024
5cdbe7c
fix EnsParTable to Dict{RAMMatrices} convert
Mar 17, 2024
e71573b
DataFrame(EnsParTable)
Mar 20, 2024
d5ac0d1
params() API method
alyst May 1, 2024
957aa8c
EnsParTable ctor: enforce same params in tables
alyst May 9, 2024
7def9bf
formatting fixes
alyst May 1, 2024
becc6b5
ParTable ctor: allow providing columns data
alyst May 1, 2024
c29b0c7
update_partable!() cleanup + docstring
alyst May 1, 2024
b9d8bc5
update_partable!(): SemFit methods use basic one
alyst May 1, 2024
6a484f1
ParTable: add explicit params field
alyst May 1, 2024
3804cc3
n_par() -> nparams()
Mar 17, 2024
ca9f860
param_values(ParTable)
alyst May 27, 2024
b117b34
lavaan_param_values(lav_fit, partable)
alyst May 1, 2024
398870b
compare_estimates() -> test_estimates()
alyst May 1, 2024
a2518b7
update_partable!(): dict-based generic version
alyst May 27, 2024
84945fa
ParTable: getindex() returns NamedTuple
alyst May 2, 2024
60e864b
ParTable: graph-based ctor supports params= kw
alyst May 2, 2024
88ea6b6
rename parameter_type to relation
alyst May 2, 2024
d57c08b
sem_summary(): cleanup filters
alyst May 2, 2024
14970a2
fix sem_summary method for partable
Maximilian-Stefan-Ernst May 19, 2024
4ba5fa8
show(ParTable): suppress NaNs
alyst May 27, 2024
10ada01
sort_vars!(ParTable): cleanup
alyst May 19, 2024
42da8a8
Project.toml: disable SymbolicUtils 1.6
alyst May 11, 2024
7892b6d
Project.toml: support StenoGraphs 0.3
alyst May 11, 2024
63ae853
RAM ctor: better error for missing meanstruct
Maximilian-Stefan-Ernst May 19, 2024
7a39a0d
add function param_indices
Maximilian-Stefan-Ernst May 19, 2024
79af810
start fixing docs
Maximilian-Stefan-Ernst May 19, 2024
7ba872a
fix regularization docs
Maximilian-Stefan-Ernst May 19, 2024
c3ee769
introduce formatting error
Maximilian-Stefan-Ernst May 19, 2024
5bb89a0
update_start(): fix docstring typo
alyst May 27, 2024
43dceff
push!(::ParTable, Tuple): check keys compat
alyst May 27, 2024
165474c
SemObsCov ctor: restrict n_obs to integer
alyst May 27, 2024
b2012b0
fixup param_indices()
alyst May 27, 2024
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introduce formatting error
@Maximilian-Stefan-Ernst @alyst
Maximilian-Stefan-Ernst authored and alyst committed May 27, 2024

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commit c3ee769fa9f12808f27806d90f3030b4e7760aab
2 changes: 1 addition & 1 deletion src/additional_functions/helper.jl
View file
Original file line number Diff line number Diff line change
@@ -41,7 +41,7 @@ function get_observed(rowind, data, semobserved; args = (), kwargs = NamedTuple(
return observed_vec
end

skipmissing_mean(mat::AbstractMatrix) =
skipmissing_mean(mat::AbstractMatrix) =
[mean(skipmissing(coldata)) for coldata in eachcol(mat)]

function F_one_person(imp_mean, meandiff, inverse, data, logdet)