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21 Open 44 Closed
21 Open 44 Closed
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Issues list

Speed up scripts
#102 opened Jun 13, 2024 by fys666
1
hicup deduplicator error in read.table function
#101 opened Feb 22, 2024 by WeiCSong
2
hicup2homer error in converting HiCPro bam file
#98 opened Dec 27, 2023 by Lei-Guo
10
Add comb_dedup and HiCUP integrity checker scripts to Misc folder enhancement New feature or request
#94 opened Aug 1, 2023 by StevenWingett
ERROR: The restriction site (re1) needs to be a valid DNA sequence
#92 opened Jun 27, 2023 by jyaomda
4
Truncation at very start of sequence.
#62 opened Jan 4, 2022 by StephenRicher
1
Display percentages in HTML report
#50 opened Mar 18, 2021 by StevenWingett
HiCUP report di-tag size plot bug Something isn't working necessary improvement Not a bug, but the code needs improving in some way
#49 opened Mar 5, 2021 by StevenWingett
2
HiCUP output if Tidyverse, Plotly and/or Pandoc not installed necessary improvement Not a bug, but the code needs improving in some way
#48 opened Mar 1, 2021 by StevenWingett
7
SAM flags could be improved? question Further information is requested
#43 opened Oct 26, 2020 by StevenWingett
NlaIII digestion problem bug Something isn't working
#39 opened Sep 29, 2020 by StevenWingett
3
DNase compatibility potential enhancement Possible enhancement, but not a priority
#37 opened Aug 13, 2020 by StevenWingett
2
Using hicup_deduplicator more than once necessary improvement Not a bug, but the code needs improving in some way
#36 opened Jul 29, 2020 by StevenWingett
Bowtie2 Failing? bug Something isn't working
#31 opened Jul 7, 2020 by StevenWingett
1
Error when passing HiCUP parameters via command line someone else's problem (reported) Problem lies with a dependency of my software. This has been reported to the relevant party.
#23 opened Jun 9, 2020 by StevenWingett
1
Processing "multi"-tag reads enhancement New feature or request
#22 opened Jun 8, 2020 by StevenWingett
1
Arima cut sites question Further information is requested
#20 opened May 18, 2020 by StevenWingett
Add to DockerHub / Anaconda enhancement New feature or request
#17 opened May 14, 2020 by StevenWingett
1
Integrate the capture script into main pipeline enhancement New feature or request
#16 opened May 14, 2020 by StevenWingett
1
Write out BAM file of muti-mapping reads for Bori for next update enhancement New feature or request
#7 opened Jul 3, 2019 by StevenWingett
Add R and Y in digester script enhancement New feature or request
#4 opened Feb 11, 2019 by StevenWingett
1
ProTip! What’s not been updated in a month: updated:<2024-11-20.