Add sparsity_mask option in estimate_templates_with_accumulator() #7354
Workflow file for this run
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| name: Testing deepinterpolation | |
| on: | |
| pull_request: | |
| types: [synchronize, opened, reopened] | |
| branches: | |
| - main | |
| concurrency: # Cancel previous workflows on the same pull request | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build-and-test: | |
| name: Test on ${{ matrix.os }} OS | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.9' | |
| - name: Get changed files | |
| id: changed-files | |
| uses: tj-actions/[email protected] | |
| - name: Deepinteprolation changes | |
| id: modules-changed | |
| run: | | |
| for file in ${{ steps.changed-files.outputs.all_changed_files }}; do | |
| if [[ $file == *"/deepinterpolation/"* ]]; then | |
| echo "DeepInterpolation changed" | |
| echo "DEEPINTERPOLATION_CHANGED=true" >> $GITHUB_OUTPUT | |
| fi | |
| done | |
| - name: Install dependencies | |
| if: ${{ steps.modules-changed.outputs.DEEPINTERPOLATION_CHANGED == 'true' }} | |
| run: | | |
| python -m pip install -U pip # Official recommended way | |
| # install deepinteprolation | |
| pip install tensorflow==2.7.0 | |
| pip install deepinterpolation@git+https://github.com/AllenInstitute/deepinterpolation.git | |
| pip install protobuf==3.20.* | |
| pip install numpy==1.26.4 | |
| pip install -e .[full,test_core] | |
| - name: Pip list | |
| if: ${{ steps.modules-changed.outputs.DEEPINTERPOLATION_CHANGED == 'true' }} | |
| run: | | |
| pip list | |
| - name: Test DeepInterpolation with pytest | |
| if: ${{ steps.modules-changed.outputs.DEEPINTERPOLATION_CHANGED == 'true' }} | |
| run: | | |
| pytest -v src/spikeinterface/preprocessing/deepinterpolation | |
| shell: bash # Necessary for pipeline to work on windows |