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ENH: Keep the input file format in preprocessing script #148

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Oct 19, 2023
Merged

ENH: Keep the input file format in preprocessing script #148

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5 changes: 4 additions & 1 deletion bin/wm_preprocess_all.py
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Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,7 @@
import os
import argparse
import multiprocessing
from pathlib import Path

import whitematteranalysis as wma

Expand Down Expand Up @@ -171,7 +172,9 @@ def pipeline(inputPolyDatas, sidx, args):
msg = "**Writing output data for subject:", subjectID
print(id_msg, msg)

fname = os.path.join(args.outputDirectory, subjectID+'_pp.vtp')
ext = Path(inputPolyDatas[sidx]).suffixes[0][1:]
fname = os.path.join(args.outputDirectory, subjectID+'_pp'+'.'+ext)

try:
print("Writing output polydata", fname, "...")
wma.io.write_polydata(wm3, fname)
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