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Update READEME
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Sherine Awad-Mahmoud committed Feb 21, 2022
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Expand Up @@ -18,9 +18,9 @@ You can run the pipeline in -use-conda mode to pull these tools automatically. S

### Edit config file

You will need to edit the *config file* to match your samples and paramteres.
You will need to edit the *config file* to match your samples and parameters.

The pipeline expects samples with suffix ".r_1.fq.gz" and ".r_2.fq.gz" if samples are paired-end.
The pipeline expects samples with suffix ".r_1.fq.gz" and ".r_2.fq.gz" if the samples are paired-end.
Any prefix before this suffix is the sample name and to be written in the "samples.tsv". For single-end reads, the samples suffix is ".fq.gz" and any prefix before this suffix is written in the **"samples.tsv"**.
For example, if your sample name is sample1.s_1.r_1.fq.gz, then your sample name in the samples file should be sample1.s_1.

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