Fix pass through of override opts

SeqWare · Feb 27, 2015 · 60cb0f7 · 60cb0f7
1 parent cfe3966
commit 60cb0f7
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/seqware-pipeline/src/main/java/io/seqware/pipeline/plugins/WorkflowLifecycle.java b/seqware-pipeline/src/main/java/io/seqware/pipeline/plugins/WorkflowLifecycle.java
@@ -212,6 +212,7 @@ private void runWorkflowSchedulerPlugin(File outFile, File tempSchedulerFile) th
             totalParams.add("--" + this.metadataWriteBackOffSpec.options().iterator().next());
         }
         if (options.has(this.nonOptionSpec)) {
+	    totalParams.add("--");
             for (String val : options.valuesOf(this.nonOptionSpec)) {
                 totalParams.add(val);
             }