Fixed a typo #128
Workflow file for this run
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| name: build | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| build: | |
| name: build | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| persist-credentials: false | |
| fetch-depth: 0 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: 3.11 | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: github-actions | |
| environment-file: workflow/envs/github-actions.yml | |
| - name: git config | |
| run: | | |
| git config --local user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| git config --local user.name "github-actions[bot]" | |
| - name: Style R code | |
| shell: bash -el {0} | |
| run: | | |
| R -e 'usethis::use_tidy_style()' | |
| git add workflow/scripts | |
| git diff-index --quiet HEAD \ | |
| || git commit \ | |
| -m '🎨 Style R code' | |
| - name: Style Python code | |
| shell: bash -el {0} | |
| run: | | |
| black workflow/ | |
| snakefmt workflow/ | |
| git add workflow/scripts workflow/rules workflow/Snakefile | |
| git diff-index --quiet HEAD \ | |
| || git commit \ | |
| -m '🎨 Style Python & Snakemake code 🐍' | |
| - name: Build graphs | |
| uses: snakemake/[email protected] | |
| with: | |
| directory: . | |
| snakefile: workflow/Snakefile | |
| args: "--use-conda --conda-frontend mamba --cores 2 make_graph_figures --configfile config/test.yaml" | |
| - name: Update container file | |
| uses: snakemake/snakemake-github-action@v1 | |
| with: | |
| directory: . | |
| snakefile: 'workflow/Snakefile' | |
| task: 'containerize' | |
| - name: Commit | |
| run: | | |
| git add figures/graphviz | |
| git commit -m "📊 Update graph figures" \ | |
| || echo "No changes in figures/graphviz to commit" | |
| git add Dockerfile | |
| git commit -m "🐳 Update Dockerfile" \ | |
| || echo "No changes in Dockerfile to commit" | |
| - name: Push | |
| uses: ad-m/github-push-action@master | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| branch: ${{ github.head_ref }} |