tree2neo

A tool to import Tree files produced by FastTree to a Neo4j Graph database.

This tool does the following:

• Starts up a Neo4j docker container
• Downloads the reference database in the /data directory of the container
• Gets TREE files from a provided directory
• Maps and loads the TREE data in Graph database

Usage

Clone this repository:

$ git clone https://github.com/SANBI-SA/tree2neo.git
$ cd tree2neo

• Standalone 💻 :

  $ virtualenv envname
  $ source envname/bin/activate
  $ pip install -r requirements.txt
  $ pip install --editable .
  $ tree2neo --help
  $ tree2neo init -d data/tree data/db/data
  

• Using docker/docker-compose 🐳 :

  $ docker-compose up --build -d