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2‐Requirement
Ruolin He edited this page Mar 11, 2024
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For windows, you can install hmmer fellow this tutorial.
For other system, you can install hmmer fellow the documentation in HMMER.
Fellowing this install tutorial.
Pfam-A models can be downloaded in InterPro.
cd your/Pfam/database/path
wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam31.0/Pfam-A.hmm.gz
gunzip Pfam-A.hmm.gz
hmmpress Pfam-A.hmm
Pfam database folder should include these files: Pfam-A.hmm, Pfam-A.hmm.h3f, Pfam-A.hmm.h3i, Pfam-A.hmm.h3m,Pfam-A.hmm.h3p.
You can find in NRPS-motif-Finder-matlab-version/reference_motif.