Bump networkx from 3.1 to 3.4

[dependabot]

Bumps networkx from 3.1 to 3.4.

Release notes

Sourced from networkx's releases.

NetworkX 3.4

networkx 3.4

We're happy to announce the release of networkx 3.4!

API Changes

• Expires the forest_str deprecation (#7414).
• [ENH, BUG]: added colliders and v_structures and deprecated compute_v_structures in dag.py (#7398).
• Expires the random_tree deprecation (#7415).
• Expire deprecation for strongly_connected_components_recursive (#7420).
• Expire deprecated sort_neighbors param in generic_bfs_edges (#7417).
• Rm deprecated normalized param from s_metric (#7418).
• Expire deprecated nx.join in favor of join_trees (#7419).
• Remove depercated Edmonds class for 3.4 (#7447).
• Remove deprecated MultiDiGraph_EdgeKey for 3.4 (#7448).
• Add edges keyword/deprecate link keyword arguments in JSON input-output (#7565).
• Revert breaking change to node_link_* link defaults (#7652).

Enhancements

• Add a nodelist feature to from_numpy_array (#7412).
• Prioritize edgelist representations in to_networkx_graph (#7424).
• Adds initial debug logging calls to _dispatchable (#7300).
• add: nodes attribute is modifiable (#7532).
• Enable config to be used as context manager (#7363).
• Added code to handle multi-graph in mst (#7454).
• Enable caching by default (#7498).
• #7546 More detail error message for pydot (#7558).
• Fix weakly_connected_components() performance on graph view (#7586).
• Forceatlas2 (#7543).
• avoid iteration and use boolean indexing (#7591).
• Hide edges with a weight of None in simple_paths (#7583).
• Improved running time for harmonic centrality (#7595).
• Add remove attribute functions (#7569).
• Log "can/should run" and caching in dispatch machinery (#7568).
• Individualize drawing attributes (#7570).
• added nx-parallel gsoc project (#7620).
• Harmonic diameter (#5251).
• Allow dispatch machinery to fall back to networkx (#7585).
• Add create_using parameter for random graphs (#5672).
• Add config option to disable warning when using cached value (#7497).

Bug Fixes

• Fix graph name attribute for complete_bipartite_graph (#7399).
• Remove import warnings during to_networkx_graph conversion (#7426).
• Fix nx.from_pandas_edgelist so edge keys are not added as edge attributes and edge keys (#7445).
• Fix from_pandas_edgelist for MultiGraph given edge_key (#7466).
• Fix dispatch tests when using numpy 2 (#7506).

... (truncated)

Commits

• fe7795a Designate 3.4 release
• 055ed84 MAINT: added discord and meetings link (#7628)
• ffd1b81 Add config option to disable warning when using cached value (#7497)
• af435c2 Add examples to docstrings of subgraph_(iso/monomorphism) methods (#7622)
• 0e85d66 Use official Python 3.13 release (#7667)
• bc7adfa Add examples section to to_scipy_sparse_array (#7627)
• 0371b0c Updates documentation to include details about using NetworkX with backends. ...
• 75f2af5 Add create_using parameter for random graphs. (#5672)
• e4ccb51 Bump release version
• ba0576a Designate 3.4rc0 release
• Additional commits viewable in compare view

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[simleo]

networkx 3.4 Requires Python >=3.10. Python 3.9 is still supported, so let's put this on hold

[dependabot]

Superseded by #85.