Merge branch 'master' of https://github.com/RTIInternational/biocloud…

…_gwas_workflows
RTIInternational · Mar 10, 2020 · eb298f0 · eb298f0
2 parents 2fecc9f + 758fc91
commit eb298f0
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Showing 2 changed files with 8 additions and 7 deletions.
diff --git a/association_testing/rvtests/rvtests_framomni_kin_wf.json b/association_testing/rvtests/rvtests_framomni_kin_wf.json
@@ -95,11 +95,12 @@
     "rvtests_gwas_wf.filter_by_pop_maf": false,
     "rvtests_gwas_wf.filter_by_sample_maf": true,
     "rvtests_gwas_wf.maf_cutoffs": [0.005, 0.01, 0.05],
-
-    "rvtests_gwas_wf.split_vcfs": false,
-    "rvtests_gwas_wf.split_vcf_cpus": 16,
-    "rvtests_gwas_wf.records_per_split": 1000000,
-    "rvtests_gwas_wf.rvtests_cpu_per_split": 8,
-    "rvtests_gwas_wf.rvtests_mem_gb_per_split": 8
+
+    "rvtests_gwas_wf.split_vcfs": true,
+    "rvtests_gwas_wf.split_vcf_cpu": 8,
+    "rvtests_gwas_wf.split_vcf_mem_gb": 8,
+    "rvtests_gwas_wf.records_per_split": 200000,
+    "rvtests_gwas_wf.rvtests_cpu_per_split": 1,
+    "rvtests_gwas_wf.rvtests_mem_gb_per_split": 2
 
 }
diff --git a/biocloud_wdl_tools b/biocloud_wdl_tools
+45 −0		convert_to_impute2_ids/convert_to_impute2_ids.wdl
+337 −0		plink/plink.wdl