Welcome to the github page for the Knockoff-Finemap combination (KFc) study utilizing 465 COVID-19 infected samples from Japan COVID-19 Task Force (Estimating gene-level false discovery probability improves eQTL statistical fine-mapping precision, published in NAR Genomics and Bioinformatics), where we utilize combination of canonical fine-mapping tools with knockoff genotype generation to improve precision.
The scripts used in the paper are stored in the codes directory.
The simulated gene expression data used in the manuscripts are stored in the simulated_phenotypes directory.
The knockoff genotype data used in the manuscripts are stored in the knockoff_genotypes directory.
